Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4431 and Ac3H11_4432 are separated by 51 nucleotides Ac3H11_4432 and Ac3H11_4433 are separated by 299 nucleotides
Ac3H11_4431 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 8,225 to 9,313
_4431
Ac3H11_4432 - Nitrogen regulation protein NR(I), at 9,365 to 11,008
_4432
Ac3H11_4433 - Exodeoxyribonuclease III (EC 3.1.11.2), at 11,308 to 12,084
_4433
Position (kb)
9
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.562 kb on + strand, within Ac3H11_4431 at 8.562 kb on + strand, within Ac3H11_4431 at 8.562 kb on + strand, within Ac3H11_4431 at 8.750 kb on + strand, within Ac3H11_4431 at 8.750 kb on + strand, within Ac3H11_4431 at 8.751 kb on - strand, within Ac3H11_4431 at 8.751 kb on - strand, within Ac3H11_4431 at 8.751 kb on - strand, within Ac3H11_4431 at 8.751 kb on - strand, within Ac3H11_4431 at 8.751 kb on - strand, within Ac3H11_4431 at 8.751 kb on - strand, within Ac3H11_4431 at 8.924 kb on + strand, within Ac3H11_4431 at 8.924 kb on + strand, within Ac3H11_4431 at 8.924 kb on + strand, within Ac3H11_4431 at 8.925 kb on - strand, within Ac3H11_4431 at 9.170 kb on + strand, within Ac3H11_4431 at 9.354 kb on + strand at 9.354 kb on + strand at 9.355 kb on - strand at 9.364 kb on + strand at 9.364 kb on + strand at 9.364 kb on + strand at 9.364 kb on + strand at 9.364 kb on + strand at 9.364 kb on + strand at 9.364 kb on + strand at 9.365 kb on - strand at 9.365 kb on - strand at 9.365 kb on - strand at 9.365 kb on - strand at 9.365 kb on - strand at 9.365 kb on - strand at 9.365 kb on - strand at 9.381 kb on + strand at 9.381 kb on + strand at 9.382 kb on - strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.384 kb on + strand at 9.385 kb on - strand at 9.385 kb on - strand at 9.385 kb on - strand at 9.385 kb on - strand at 9.385 kb on - strand at 9.385 kb on - strand at 9.385 kb on - strand at 9.632 kb on + strand, within Ac3H11_4432 at 9.633 kb on - strand, within Ac3H11_4432 at 9.633 kb on - strand, within Ac3H11_4432 at 9.683 kb on + strand, within Ac3H11_4432 at 9.683 kb on + strand, within Ac3H11_4432 at 9.683 kb on + strand, within Ac3H11_4432 at 9.684 kb on - strand, within Ac3H11_4432 at 10.160 kb on + strand, within Ac3H11_4432 at 10.717 kb on + strand, within Ac3H11_4432 at 10.717 kb on + strand, within Ac3H11_4432 at 10.717 kb on + strand, within Ac3H11_4432 at 10.717 kb on + strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 10.718 kb on - strand, within Ac3H11_4432 at 11.043 kb on - strand at 11.146 kb on + strand at 11.146 kb on + strand at 11.146 kb on + strand at 11.147 kb on - strand at 11.244 kb on + strand at 11.276 kb on - strand at 11.279 kb on - strand at 11.286 kb on + strand at 11.286 kb on + strand at 11.720 kb on + strand, within Ac3H11_4433 at 11.720 kb on + strand, within Ac3H11_4433 at 11.762 kb on + strand, within Ac3H11_4433 at 11.762 kb on + strand, within Ac3H11_4433
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 8,562 + Ac3H11_4431 0.31 +0.1 8,562 + Ac3H11_4431 0.31 +2.3 8,562 + Ac3H11_4431 0.31 +0.5 8,750 + Ac3H11_4431 0.48 +0.5 8,750 + Ac3H11_4431 0.48 -0.1 8,751 - Ac3H11_4431 0.48 +0.4 8,751 - Ac3H11_4431 0.48 -0.0 8,751 - Ac3H11_4431 0.48 +1.9 8,751 - Ac3H11_4431 0.48 +0.6 8,751 - Ac3H11_4431 0.48 +0.5 8,751 - Ac3H11_4431 0.48 +0.9 8,924 + Ac3H11_4431 0.64 +0.2 8,924 + Ac3H11_4431 0.64 -1.2 8,924 + Ac3H11_4431 0.64 +0.4 8,925 - Ac3H11_4431 0.64 +0.0 9,170 + Ac3H11_4431 0.87 +1.6 9,354 + +0.2 9,354 + -0.4 9,355 - +0.8 9,364 + -0.1 9,364 + +0.3 9,364 + +0.8 9,364 + +0.4 9,364 + +1.0 9,364 + -0.7 9,364 + +0.4 9,365 - -0.2 9,365 - +1.9 9,365 - +0.4 9,365 - -0.5 9,365 - +0.0 9,365 - +0.9 9,365 - +0.8 9,381 + +0.3 9,381 + +0.2 9,382 - +0.7 9,384 + +0.3 9,384 + +0.3 9,384 + +0.4 9,384 + +0.1 9,384 + -0.6 9,384 + +0.6 9,384 + +1.2 9,384 + +0.6 9,384 + +1.0 9,385 - +0.0 9,385 - +1.9 9,385 - -0.4 9,385 - +0.1 9,385 - +0.1 9,385 - +0.8 9,385 - +0.4 9,632 + Ac3H11_4432 0.16 +0.7 9,633 - Ac3H11_4432 0.16 +0.7 9,633 - Ac3H11_4432 0.16 +0.4 9,683 + Ac3H11_4432 0.19 +0.2 9,683 + Ac3H11_4432 0.19 +0.5 9,683 + Ac3H11_4432 0.19 -0.2 9,684 - Ac3H11_4432 0.19 +0.2 10,160 + Ac3H11_4432 0.48 +0.5 10,717 + Ac3H11_4432 0.82 +0.9 10,717 + Ac3H11_4432 0.82 +0.6 10,717 + Ac3H11_4432 0.82 -0.1 10,717 + Ac3H11_4432 0.82 +0.7 10,718 - Ac3H11_4432 0.82 +0.7 10,718 - Ac3H11_4432 0.82 +0.5 10,718 - Ac3H11_4432 0.82 +1.0 10,718 - Ac3H11_4432 0.82 -1.1 10,718 - Ac3H11_4432 0.82 +0.8 10,718 - Ac3H11_4432 0.82 +0.1 10,718 - Ac3H11_4432 0.82 +0.2 10,718 - Ac3H11_4432 0.82 +0.3 10,718 - Ac3H11_4432 0.82 +0.3 10,718 - Ac3H11_4432 0.82 +0.4 11,043 - +1.2 11,146 + +0.4 11,146 + +0.4 11,146 + +1.2 11,147 - -0.5 11,244 + +1.0 11,276 - -0.2 11,279 - +0.5 11,286 + -0.1 11,286 + +0.3 11,720 + Ac3H11_4433 0.53 -1.0 11,720 + Ac3H11_4433 0.53 -1.8 11,762 + Ac3H11_4433 0.58 -2.6 11,762 + Ac3H11_4433 0.58 +1.6
Or see this region's nucleotide sequence