Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4432

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4431 and Ac3H11_4432 are separated by 51 nucleotidesAc3H11_4432 and Ac3H11_4433 are separated by 299 nucleotides Ac3H11_4431 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 8,225 to 9,313 _4431 Ac3H11_4432 - Nitrogen regulation protein NR(I), at 9,365 to 11,008 _4432 Ac3H11_4433 - Exodeoxyribonuclease III (EC 3.1.11.2), at 11,308 to 12,084 _4433 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 8.562 kb on + strand, within Ac3H11_4431at 8.562 kb on + strand, within Ac3H11_4431at 8.562 kb on + strand, within Ac3H11_4431at 8.750 kb on + strand, within Ac3H11_4431at 8.750 kb on + strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.924 kb on + strand, within Ac3H11_4431at 8.924 kb on + strand, within Ac3H11_4431at 8.924 kb on + strand, within Ac3H11_4431at 8.925 kb on - strand, within Ac3H11_4431at 9.170 kb on + strand, within Ac3H11_4431at 9.354 kb on + strandat 9.354 kb on + strandat 9.355 kb on - strandat 9.364 kb on + strandat 9.364 kb on + strandat 9.364 kb on + strandat 9.364 kb on + strandat 9.364 kb on + strandat 9.364 kb on + strandat 9.364 kb on + strandat 9.365 kb on - strandat 9.365 kb on - strandat 9.365 kb on - strandat 9.365 kb on - strandat 9.365 kb on - strandat 9.365 kb on - strandat 9.365 kb on - strandat 9.381 kb on + strandat 9.381 kb on + strandat 9.382 kb on - strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.384 kb on + strandat 9.385 kb on - strandat 9.385 kb on - strandat 9.385 kb on - strandat 9.385 kb on - strandat 9.385 kb on - strandat 9.385 kb on - strandat 9.385 kb on - strandat 9.632 kb on + strand, within Ac3H11_4432at 9.633 kb on - strand, within Ac3H11_4432at 9.633 kb on - strand, within Ac3H11_4432at 9.683 kb on + strand, within Ac3H11_4432at 9.683 kb on + strand, within Ac3H11_4432at 9.683 kb on + strand, within Ac3H11_4432at 9.684 kb on - strand, within Ac3H11_4432at 10.160 kb on + strand, within Ac3H11_4432at 10.717 kb on + strand, within Ac3H11_4432at 10.717 kb on + strand, within Ac3H11_4432at 10.717 kb on + strand, within Ac3H11_4432at 10.717 kb on + strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 10.718 kb on - strand, within Ac3H11_4432at 11.043 kb on - strandat 11.146 kb on + strandat 11.146 kb on + strandat 11.146 kb on + strandat 11.147 kb on - strandat 11.244 kb on + strandat 11.276 kb on - strandat 11.279 kb on - strandat 11.286 kb on + strandat 11.286 kb on + strandat 11.720 kb on + strand, within Ac3H11_4433at 11.720 kb on + strand, within Ac3H11_4433at 11.762 kb on + strand, within Ac3H11_4433at 11.762 kb on + strand, within Ac3H11_4433

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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8,562 + Ac3H11_4431 0.31 +0.1
8,562 + Ac3H11_4431 0.31 +2.3
8,562 + Ac3H11_4431 0.31 +0.5
8,750 + Ac3H11_4431 0.48 +0.5
8,750 + Ac3H11_4431 0.48 -0.1
8,751 - Ac3H11_4431 0.48 +0.4
8,751 - Ac3H11_4431 0.48 -0.0
8,751 - Ac3H11_4431 0.48 +1.9
8,751 - Ac3H11_4431 0.48 +0.6
8,751 - Ac3H11_4431 0.48 +0.5
8,751 - Ac3H11_4431 0.48 +0.9
8,924 + Ac3H11_4431 0.64 +0.2
8,924 + Ac3H11_4431 0.64 -1.2
8,924 + Ac3H11_4431 0.64 +0.4
8,925 - Ac3H11_4431 0.64 +0.0
9,170 + Ac3H11_4431 0.87 +1.6
9,354 + +0.2
9,354 + -0.4
9,355 - +0.8
9,364 + -0.1
9,364 + +0.3
9,364 + +0.8
9,364 + +0.4
9,364 + +1.0
9,364 + -0.7
9,364 + +0.4
9,365 - -0.2
9,365 - +1.9
9,365 - +0.4
9,365 - -0.5
9,365 - +0.0
9,365 - +0.9
9,365 - +0.8
9,381 + +0.3
9,381 + +0.2
9,382 - +0.7
9,384 + +0.3
9,384 + +0.3
9,384 + +0.4
9,384 + +0.1
9,384 + -0.6
9,384 + +0.6
9,384 + +1.2
9,384 + +0.6
9,384 + +1.0
9,385 - +0.0
9,385 - +1.9
9,385 - -0.4
9,385 - +0.1
9,385 - +0.1
9,385 - +0.8
9,385 - +0.4
9,632 + Ac3H11_4432 0.16 +0.7
9,633 - Ac3H11_4432 0.16 +0.7
9,633 - Ac3H11_4432 0.16 +0.4
9,683 + Ac3H11_4432 0.19 +0.2
9,683 + Ac3H11_4432 0.19 +0.5
9,683 + Ac3H11_4432 0.19 -0.2
9,684 - Ac3H11_4432 0.19 +0.2
10,160 + Ac3H11_4432 0.48 +0.5
10,717 + Ac3H11_4432 0.82 +0.9
10,717 + Ac3H11_4432 0.82 +0.6
10,717 + Ac3H11_4432 0.82 -0.1
10,717 + Ac3H11_4432 0.82 +0.7
10,718 - Ac3H11_4432 0.82 +0.7
10,718 - Ac3H11_4432 0.82 +0.5
10,718 - Ac3H11_4432 0.82 +1.0
10,718 - Ac3H11_4432 0.82 -1.1
10,718 - Ac3H11_4432 0.82 +0.8
10,718 - Ac3H11_4432 0.82 +0.1
10,718 - Ac3H11_4432 0.82 +0.2
10,718 - Ac3H11_4432 0.82 +0.3
10,718 - Ac3H11_4432 0.82 +0.3
10,718 - Ac3H11_4432 0.82 +0.4
11,043 - +1.2
11,146 + +0.4
11,146 + +0.4
11,146 + +1.2
11,147 - -0.5
11,244 + +1.0
11,276 - -0.2
11,279 - +0.5
11,286 + -0.1
11,286 + +0.3
11,720 + Ac3H11_4433 0.53 -1.0
11,720 + Ac3H11_4433 0.53 -1.8
11,762 + Ac3H11_4433 0.58 -2.6
11,762 + Ac3H11_4433 0.58 +1.6

Or see this region's nucleotide sequence