Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1338 and Ac3H11_1339 are separated by 30 nucleotides Ac3H11_1339 and Ac3H11_1340 overlap by 4 nucleotides Ac3H11_1340 and Ac3H11_1341 are separated by 917 nucleotides
Ac3H11_1338 - Mobile element protein, at 26,903 to 27,022
_1338
Ac3H11_1339 - Mobile element protein, at 27,053 to 27,376
_1339
Ac3H11_1340 - Mobile element protein, at 27,373 to 28,287
_1340
Ac3H11_1341 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 29,205 to 30,533
_1341
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.468 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.478 kb on - strand at 26.478 kb on - strand at 26.520 kb on + strand at 26.520 kb on + strand at 26.521 kb on - strand at 26.521 kb on - strand at 26.527 kb on - strand at 26.538 kb on + strand at 26.538 kb on + strand at 26.538 kb on + strand at 26.538 kb on + strand at 26.539 kb on - strand at 26.700 kb on - strand at 26.731 kb on + strand at 26.731 kb on + strand at 26.731 kb on + strand at 26.732 kb on - strand at 26.742 kb on + strand at 26.742 kb on + strand at 26.743 kb on - strand at 26.755 kb on + strand at 26.756 kb on - strand at 26.826 kb on + strand at 26.826 kb on + strand at 26.826 kb on + strand at 26.827 kb on - strand at 26.827 kb on - strand at 26.827 kb on - strand at 26.827 kb on - strand at 26.828 kb on + strand at 26.828 kb on + strand at 26.828 kb on + strand at 26.829 kb on - strand at 26.829 kb on - strand at 26.829 kb on - strand at 27.128 kb on + strand, within Ac3H11_1339 at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.382 kb on + strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.406 kb on + strand at 27.406 kb on + strand at 27.406 kb on + strand at 27.407 kb on - strand at 27.407 kb on - strand at 27.454 kb on + strand at 27.455 kb on - strand at 27.568 kb on + strand, within Ac3H11_1340 at 27.568 kb on + strand, within Ac3H11_1340 at 27.569 kb on - strand, within Ac3H11_1340 at 27.569 kb on - strand, within Ac3H11_1340 at 27.580 kb on - strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.790 kb on + strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.791 kb on - strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.817 kb on + strand, within Ac3H11_1340 at 27.818 kb on - strand, within Ac3H11_1340 at 27.818 kb on - strand, within Ac3H11_1340 at 27.818 kb on - strand, within Ac3H11_1340 at 27.818 kb on - strand, within Ac3H11_1340 at 27.818 kb on - strand, within Ac3H11_1340 at 27.818 kb on - strand, within Ac3H11_1340 at 27.841 kb on + strand, within Ac3H11_1340 at 27.841 kb on + strand, within Ac3H11_1340 at 27.841 kb on + strand, within Ac3H11_1340 at 27.841 kb on + strand, within Ac3H11_1340 at 27.842 kb on - strand, within Ac3H11_1340 at 27.842 kb on - strand, within Ac3H11_1340 at 27.842 kb on - strand, within Ac3H11_1340 at 27.922 kb on + strand, within Ac3H11_1340 at 27.922 kb on + strand, within Ac3H11_1340 at 27.922 kb on + strand, within Ac3H11_1340 at 27.923 kb on - strand, within Ac3H11_1340 at 27.923 kb on - strand, within Ac3H11_1340 at 27.923 kb on - strand, within Ac3H11_1340 at 27.923 kb on - strand, within Ac3H11_1340 at 27.923 kb on - strand, within Ac3H11_1340 at 27.979 kb on + strand, within Ac3H11_1340 at 27.979 kb on + strand, within Ac3H11_1340 at 27.979 kb on + strand, within Ac3H11_1340 at 27.980 kb on - strand, within Ac3H11_1340 at 27.980 kb on - strand, within Ac3H11_1340 at 27.980 kb on - strand, within Ac3H11_1340 at 27.980 kb on - strand, within Ac3H11_1340 at 27.980 kb on - strand, within Ac3H11_1340 at 27.994 kb on + strand, within Ac3H11_1340 at 27.994 kb on + strand, within Ac3H11_1340 at 27.995 kb on - strand, within Ac3H11_1340 at 27.995 kb on - strand, within Ac3H11_1340 at 28.022 kb on + strand, within Ac3H11_1340 at 28.022 kb on + strand at 28.022 kb on + strand, within Ac3H11_1340 at 28.022 kb on + strand, within Ac3H11_1340 at 28.023 kb on - strand, within Ac3H11_1340 at 28.023 kb on - strand, within Ac3H11_1340 at 28.023 kb on - strand, within Ac3H11_1340 at 28.023 kb on - strand, within Ac3H11_1340 at 28.023 kb on - strand, within Ac3H11_1340 at 28.023 kb on - strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.054 kb on + strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.055 kb on - strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.090 kb on + strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.091 kb on - strand, within Ac3H11_1340 at 28.532 kb on + strand at 28.602 kb on + strand at 28.602 kb on + strand at 28.602 kb on + strand at 28.603 kb on - strand at 28.603 kb on - strand at 28.603 kb on - strand at 28.625 kb on + strand at 28.625 kb on + strand at 28.625 kb on + strand at 28.634 kb on + strand at 28.635 kb on - strand at 28.652 kb on - strand at 28.683 kb on + strand at 28.683 kb on + strand at 28.683 kb on + strand at 28.684 kb on - strand at 28.695 kb on + strand at 28.695 kb on + strand at 28.695 kb on + strand at 28.695 kb on + strand at 28.695 kb on + strand at 28.695 kb on + strand at 28.696 kb on - strand at 28.696 kb on - strand at 28.696 kb on - strand at 28.696 kb on - strand at 28.696 kb on - strand at 28.696 kb on - strand at 28.719 kb on + strand at 28.719 kb on + strand at 28.719 kb on + strand at 28.719 kb on + strand at 28.720 kb on - strand at 28.720 kb on - strand at 28.724 kb on + strand at 28.724 kb on + strand at 28.724 kb on + strand at 28.724 kb on + strand at 28.725 kb on - strand at 28.725 kb on - strand at 28.725 kb on - strand at 28.734 kb on - strand at 28.793 kb on + strand at 28.804 kb on + strand at 28.804 kb on + strand at 28.804 kb on + strand at 28.814 kb on + strand at 28.814 kb on + strand at 28.815 kb on - strand at 28.869 kb on + strand at 28.870 kb on - strand at 28.870 kb on - strand at 28.870 kb on - strand at 28.891 kb on + strand at 28.892 kb on - strand at 28.968 kb on + strand at 28.969 kb on - strand at 28.969 kb on - strand at 29.105 kb on + strand at 29.135 kb on + strand at 29.135 kb on + strand at 29.135 kb on + strand at 29.136 kb on - strand at 29.136 kb on - strand at 29.136 kb on - strand at 29.195 kb on + strand at 29.196 kb on - strand at 29.196 kb on - strand at 29.196 kb on - strand at 29.196 kb on - strand at 29.196 kb on - strand at 29.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 26,468 + +0.1 26,477 + -0.1 26,477 + +0.1 26,477 + +0.5 26,477 + +0.0 26,477 + +0.0 26,477 + -0.0 26,477 + +0.3 26,477 + -0.7 26,478 - +0.3 26,478 - -1.5 26,520 + +0.1 26,520 + +0.3 26,521 - -0.2 26,521 - +0.6 26,527 - +0.2 26,538 + -0.4 26,538 + +0.1 26,538 + +0.1 26,538 + +0.5 26,539 - +0.8 26,700 - -0.1 26,731 + +0.2 26,731 + -0.3 26,731 + +0.2 26,732 - +0.7 26,742 + -0.4 26,742 + -0.2 26,743 - -1.2 26,755 + +0.2 26,756 - +0.9 26,826 + +0.4 26,826 + +0.5 26,826 + -0.5 26,827 - -1.3 26,827 - -0.2 26,827 - -0.5 26,827 - +0.1 26,828 + +0.1 26,828 + -0.2 26,828 + -0.2 26,829 - -0.7 26,829 - +0.2 26,829 - -0.0 27,128 + Ac3H11_1339 0.23 +1.0 27,382 + +0.4 27,382 + -1.1 27,382 + +0.6 27,382 + +0.5 27,382 + +0.0 27,382 + +0.6 27,382 + +0.6 27,382 + +0.5 27,382 + +0.8 27,382 + -0.4 27,382 + -0.1 27,383 - -0.5 27,383 - -0.9 27,383 - -0.9 27,383 - +0.1 27,383 - -0.8 27,383 - -0.0 27,406 + -0.3 27,406 + +0.3 27,406 + +0.4 27,407 - -2.5 27,407 - -0.9 27,454 + +1.1 27,455 - +0.6 27,568 + Ac3H11_1340 0.21 +0.3 27,568 + Ac3H11_1340 0.21 -0.2 27,569 - Ac3H11_1340 0.21 +0.1 27,569 - Ac3H11_1340 0.21 -0.2 27,580 - Ac3H11_1340 0.23 +0.3 27,790 + Ac3H11_1340 0.46 -0.0 27,790 + Ac3H11_1340 0.46 -0.4 27,790 + Ac3H11_1340 0.46 +0.1 27,790 + Ac3H11_1340 0.46 -0.0 27,790 + Ac3H11_1340 0.46 -0.3 27,790 + Ac3H11_1340 0.46 +0.3 27,790 + Ac3H11_1340 0.46 -0.3 27,790 + Ac3H11_1340 0.46 -0.5 27,791 - Ac3H11_1340 0.46 -0.3 27,791 - Ac3H11_1340 0.46 +0.7 27,791 - Ac3H11_1340 0.46 -0.7 27,791 - Ac3H11_1340 0.46 +0.7 27,791 - Ac3H11_1340 0.46 +0.3 27,791 - Ac3H11_1340 0.46 +1.1 27,791 - Ac3H11_1340 0.46 -1.7 27,791 - Ac3H11_1340 0.46 +0.2 27,791 - Ac3H11_1340 0.46 +0.4 27,791 - Ac3H11_1340 0.46 +0.5 27,791 - Ac3H11_1340 0.46 +0.1 27,817 + Ac3H11_1340 0.49 +0.6 27,817 + Ac3H11_1340 0.49 +0.1 27,817 + Ac3H11_1340 0.49 -0.8 27,817 + Ac3H11_1340 0.49 +0.6 27,817 + Ac3H11_1340 0.49 -0.6 27,817 + Ac3H11_1340 0.49 +0.6 27,817 + Ac3H11_1340 0.49 -0.4 27,817 + Ac3H11_1340 0.49 +0.3 27,818 - Ac3H11_1340 0.49 +0.7 27,818 - Ac3H11_1340 0.49 +0.8 27,818 - Ac3H11_1340 0.49 +0.7 27,818 - Ac3H11_1340 0.49 +0.9 27,818 - Ac3H11_1340 0.49 -0.1 27,818 - Ac3H11_1340 0.49 +1.4 27,841 + Ac3H11_1340 0.51 -0.8 27,841 + Ac3H11_1340 0.51 +0.8 27,841 + Ac3H11_1340 0.51 -1.2 27,841 + Ac3H11_1340 0.51 -0.6 27,842 - Ac3H11_1340 0.51 -0.3 27,842 - Ac3H11_1340 0.51 -0.0 27,842 - Ac3H11_1340 0.51 -0.0 27,922 + Ac3H11_1340 0.60 +0.4 27,922 + Ac3H11_1340 0.60 +0.0 27,922 + Ac3H11_1340 0.60 -0.2 27,923 - Ac3H11_1340 0.60 +0.9 27,923 - Ac3H11_1340 0.60 +0.4 27,923 - Ac3H11_1340 0.60 -0.3 27,923 - Ac3H11_1340 0.60 -1.6 27,923 - Ac3H11_1340 0.60 -0.8 27,979 + Ac3H11_1340 0.66 +2.1 27,979 + Ac3H11_1340 0.66 -0.3 27,979 + Ac3H11_1340 0.66 -0.8 27,980 - Ac3H11_1340 0.66 +0.3 27,980 - Ac3H11_1340 0.66 -0.6 27,980 - Ac3H11_1340 0.66 -0.5 27,980 - Ac3H11_1340 0.66 -0.2 27,980 - Ac3H11_1340 0.66 +0.2 27,994 + Ac3H11_1340 0.68 -0.6 27,994 + Ac3H11_1340 0.68 +1.4 27,995 - Ac3H11_1340 0.68 -0.0 27,995 - Ac3H11_1340 0.68 -0.3 28,022 + Ac3H11_1340 0.71 +0.2 28,022 + +1.4 28,022 + Ac3H11_1340 0.71 +0.5 28,022 + Ac3H11_1340 0.71 +0.1 28,023 - Ac3H11_1340 0.71 -0.4 28,023 - Ac3H11_1340 0.71 -0.2 28,023 - Ac3H11_1340 0.71 +0.5 28,023 - Ac3H11_1340 0.71 +0.4 28,023 - Ac3H11_1340 0.71 -1.1 28,023 - Ac3H11_1340 0.71 -0.2 28,054 + Ac3H11_1340 0.74 -0.7 28,054 + Ac3H11_1340 0.74 +0.3 28,054 + Ac3H11_1340 0.74 +0.2 28,054 + Ac3H11_1340 0.74 -0.7 28,054 + Ac3H11_1340 0.74 +0.0 28,054 + Ac3H11_1340 0.74 -0.1 28,054 + Ac3H11_1340 0.74 -0.2 28,054 + Ac3H11_1340 0.74 +0.2 28,054 + Ac3H11_1340 0.74 -1.1 28,054 + Ac3H11_1340 0.74 +0.2 28,054 + Ac3H11_1340 0.74 -0.4 28,054 + Ac3H11_1340 0.74 +0.1 28,054 + Ac3H11_1340 0.74 -0.2 28,054 + Ac3H11_1340 0.74 +1.3 28,054 + Ac3H11_1340 0.74 -0.2 28,054 + Ac3H11_1340 0.74 +0.3 28,055 - Ac3H11_1340 0.75 -0.0 28,055 - Ac3H11_1340 0.75 -0.3 28,055 - Ac3H11_1340 0.75 -0.2 28,055 - Ac3H11_1340 0.75 -0.4 28,055 - Ac3H11_1340 0.75 -0.1 28,055 - Ac3H11_1340 0.75 +0.5 28,055 - Ac3H11_1340 0.75 -0.0 28,055 - Ac3H11_1340 0.75 +0.2 28,055 - Ac3H11_1340 0.75 -0.7 28,055 - Ac3H11_1340 0.75 -0.5 28,055 - Ac3H11_1340 0.75 +0.3 28,055 - Ac3H11_1340 0.75 -1.2 28,055 - Ac3H11_1340 0.75 +0.0 28,055 - Ac3H11_1340 0.75 +0.6 28,055 - Ac3H11_1340 0.75 -0.2 28,055 - Ac3H11_1340 0.75 -0.3 28,055 - Ac3H11_1340 0.75 -0.2 28,090 + Ac3H11_1340 0.78 +0.2 28,090 + Ac3H11_1340 0.78 -0.2 28,090 + Ac3H11_1340 0.78 +1.0 28,090 + Ac3H11_1340 0.78 -0.4 28,090 + Ac3H11_1340 0.78 +0.0 28,090 + Ac3H11_1340 0.78 -0.4 28,090 + Ac3H11_1340 0.78 -0.3 28,090 + Ac3H11_1340 0.78 -0.1 28,090 + Ac3H11_1340 0.78 -0.8 28,090 + Ac3H11_1340 0.78 -0.3 28,090 + Ac3H11_1340 0.78 -0.2 28,090 + Ac3H11_1340 0.78 +1.7 28,091 - Ac3H11_1340 0.78 -1.0 28,091 - Ac3H11_1340 0.78 +0.5 28,091 - Ac3H11_1340 0.78 -0.5 28,091 - Ac3H11_1340 0.78 -0.1 28,091 - Ac3H11_1340 0.78 -0.5 28,091 - Ac3H11_1340 0.78 -0.5 28,091 - Ac3H11_1340 0.78 +0.0 28,091 - Ac3H11_1340 0.78 -2.2 28,532 + -0.5 28,602 + -0.2 28,602 + -0.5 28,602 + -0.7 28,603 - +0.1 28,603 - +1.4 28,603 - -0.3 28,625 + +0.0 28,625 + -0.1 28,625 + -1.0 28,634 + -0.6 28,635 - -1.0 28,652 - -0.5 28,683 + +0.4 28,683 + +0.1 28,683 + -0.5 28,684 - +0.9 28,695 + -0.3 28,695 + +0.3 28,695 + -0.4 28,695 + +0.7 28,695 + -0.4 28,695 + +0.8 28,696 - -1.4 28,696 - -0.5 28,696 - -0.4 28,696 - -0.2 28,696 - +0.1 28,696 - -0.2 28,719 + -0.1 28,719 + +1.2 28,719 + -0.5 28,719 + -0.5 28,720 - +0.7 28,720 - -0.2 28,724 + -0.3 28,724 + -0.7 28,724 + -0.7 28,724 + +0.2 28,725 - +0.2 28,725 - -0.0 28,725 - +0.2 28,734 - +0.1 28,793 + -0.3 28,804 + -0.0 28,804 + +0.3 28,804 + -1.1 28,814 + +0.4 28,814 + -0.7 28,815 - -0.4 28,869 + -0.3 28,870 - +0.8 28,870 - -0.6 28,870 - +0.3 28,891 + +0.3 28,892 - +0.2 28,968 + +0.4 28,969 - +0.0 28,969 - -0.3 29,105 + -0.3 29,135 + +0.5 29,135 + +0.0 29,135 + -0.8 29,136 - +0.2 29,136 - -0.7 29,136 - -0.2 29,195 + -0.3 29,196 - -0.4 29,196 - +0.3 29,196 - +1.2 29,196 - +1.0 29,196 - -0.2 29,206 + -0.6
Or see this region's nucleotide sequence