Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28155 and AZOBR_RS28160 are separated by 424 nucleotides AZOBR_RS28160 and AZOBR_RS28165 are separated by 151 nucleotides AZOBR_RS28165 and AZOBR_RS28170 are separated by 36 nucleotides
AZOBR_RS28155: AZOBR_RS28155 - transcriptional regulator LysR family protein, at 488,129 to 489,355
_RS28155
AZOBR_RS28160: AZOBR_RS28160 - hypothetical protein, at 489,780 to 490,349
_RS28160
AZOBR_RS28165: AZOBR_RS28165 - hypothetical protein, at 490,501 to 490,743
_RS28165
AZOBR_RS28170: AZOBR_RS28170 - TetR family transcriptional regulator, at 490,780 to 491,376
_RS28170
Position (kb) 489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 489.468 kb on + strand at 489.469 kb on - strand at 489.469 kb on - strand at 489.472 kb on + strand at 489.473 kb on - strand at 489.473 kb on - strand at 489.790 kb on + strand at 489.790 kb on + strand at 489.790 kb on + strand at 489.791 kb on - strand at 489.856 kb on + strand, within AZOBR_RS28160 at 489.856 kb on + strand, within AZOBR_RS28160 at 489.979 kb on + strand, within AZOBR_RS28160 at 489.980 kb on - strand, within AZOBR_RS28160 at 489.980 kb on - strand, within AZOBR_RS28160 at 490.012 kb on + strand, within AZOBR_RS28160 at 490.012 kb on + strand, within AZOBR_RS28160 at 491.235 kb on - strand, within AZOBR_RS28170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 489,468 + +0.2 489,469 - +1.5 489,469 - -0.2 489,472 + +0.3 489,473 - -1.3 489,473 - +0.2 489,790 + +0.5 489,790 + -0.1 489,790 + +0.2 489,791 - +0.5 489,856 + AZOBR_RS28160 0.13 +0.5 489,856 + AZOBR_RS28160 0.13 -0.0 489,979 + AZOBR_RS28160 0.35 +0.3 489,980 - AZOBR_RS28160 0.35 -2.8 489,980 - AZOBR_RS28160 0.35 -0.1 490,012 + AZOBR_RS28160 0.41 +0.5 490,012 + AZOBR_RS28160 0.41 +0.9 491,235 - AZOBR_RS28170 0.76 -1.1
Or see this region's nucleotide sequence