Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27300

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27295 and AO353_27300 overlap by 4 nucleotidesAO353_27300 and AO353_27305 are separated by 1 nucleotidesAO353_27305 and AO353_27310 overlap by 4 nucleotides AO353_27295: AO353_27295 - phage tail protein, at 5,968,970 to 5,970,502 _27295 AO353_27300: AO353_27300 - phage tail protein, at 5,970,499 to 5,971,104 _27300 AO353_27305: AO353_27305 - baseplate assembly protein, at 5,971,106 to 5,971,987 _27305 AO353_27310: AO353_27310 - phage baseplate protein, at 5,971,984 to 5,972,310 _27310 Position (kb) 5970 5971 5972Strain fitness (log2 ratio) -2 -1 0 1 2at 5969.617 kb on + strand, within AO353_27295at 5969.714 kb on - strand, within AO353_27295at 5969.792 kb on + strand, within AO353_27295at 5969.792 kb on + strand, within AO353_27295at 5969.792 kb on + strand, within AO353_27295at 5969.792 kb on + strand, within AO353_27295at 5969.792 kb on + strand, within AO353_27295at 5969.865 kb on + strand, within AO353_27295at 5969.865 kb on + strand, within AO353_27295at 5969.865 kb on + strand, within AO353_27295at 5969.865 kb on + strand, within AO353_27295at 5969.866 kb on - strand, within AO353_27295at 5969.866 kb on - strand, within AO353_27295at 5969.866 kb on - strand, within AO353_27295at 5970.012 kb on + strand, within AO353_27295at 5970.012 kb on + strand, within AO353_27295at 5970.012 kb on + strand, within AO353_27295at 5970.012 kb on + strand, within AO353_27295at 5970.013 kb on - strand, within AO353_27295at 5970.013 kb on - strand, within AO353_27295at 5970.013 kb on - strand, within AO353_27295at 5970.013 kb on - strand, within AO353_27295at 5970.013 kb on - strand, within AO353_27295at 5970.013 kb on - strand, within AO353_27295at 5970.213 kb on + strand, within AO353_27295at 5970.213 kb on + strand, within AO353_27295at 5970.259 kb on + strand, within AO353_27295at 5970.466 kb on + strandat 5970.467 kb on - strandat 5970.506 kb on + strandat 5970.506 kb on + strandat 5970.506 kb on + strandat 5970.506 kb on + strandat 5970.507 kb on - strandat 5970.507 kb on - strandat 5970.507 kb on - strandat 5970.507 kb on - strandat 5970.524 kb on - strandat 5970.615 kb on - strand, within AO353_27300at 5970.742 kb on - strand, within AO353_27300at 5970.817 kb on - strand, within AO353_27300at 5970.830 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.890 kb on + strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.891 kb on - strand, within AO353_27300at 5970.893 kb on + strand, within AO353_27300at 5970.893 kb on + strand, within AO353_27300at 5970.893 kb on + strand, within AO353_27300at 5970.893 kb on + strand, within AO353_27300at 5970.893 kb on + strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5970.894 kb on - strand, within AO353_27300at 5971.010 kb on + strand, within AO353_27300at 5971.010 kb on + strand, within AO353_27300at 5971.010 kb on + strand, within AO353_27300at 5971.010 kb on + strand, within AO353_27300at 5971.011 kb on - strand, within AO353_27300at 5971.093 kb on + strandat 5971.094 kb on - strandat 5971.094 kb on - strandat 5971.128 kb on + strandat 5971.129 kb on - strandat 5971.412 kb on + strand, within AO353_27305at 5971.413 kb on - strand, within AO353_27305at 5971.502 kb on - strand, within AO353_27305at 5971.502 kb on - strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.507 kb on - strand, within AO353_27305at 5971.507 kb on - strand, within AO353_27305at 5971.507 kb on - strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.611 kb on + strand, within AO353_27305at 5971.612 kb on - strand, within AO353_27305at 5971.612 kb on - strand, within AO353_27305at 5971.751 kb on + strand, within AO353_27305at 5971.752 kb on - strand, within AO353_27305at 5971.752 kb on - strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strandat 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.887 kb on + strand, within AO353_27305at 5971.887 kb on + strand, within AO353_27305at 5971.887 kb on + strand, within AO353_27305at 5971.888 kb on - strand, within AO353_27305at 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.918 kb on - strandat 5971.918 kb on - strandat 5971.981 kb on + strandat 5971.981 kb on + strandat 5971.987 kb on + strandat 5971.987 kb on + strandat 5971.987 kb on + strandat 5971.988 kb on - strandat 5971.988 kb on - strandat 5971.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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5,969,617 + AO353_27295 0.42 +0.5
5,969,714 - AO353_27295 0.49 -0.7
5,969,792 + AO353_27295 0.54 +0.4
5,969,792 + AO353_27295 0.54 -0.7
5,969,792 + AO353_27295 0.54 +1.3
5,969,792 + AO353_27295 0.54 -0.3
5,969,792 + AO353_27295 0.54 -0.4
5,969,865 + AO353_27295 0.58 +1.3
5,969,865 + AO353_27295 0.58 -0.4
5,969,865 + AO353_27295 0.58 +0.4
5,969,865 + AO353_27295 0.58 -1.3
5,969,866 - AO353_27295 0.58 -0.4
5,969,866 - AO353_27295 0.58 +0.8
5,969,866 - AO353_27295 0.58 +0.8
5,970,012 + AO353_27295 0.68 +2.3
5,970,012 + AO353_27295 0.68 -2.4
5,970,012 + AO353_27295 0.68 -1.2
5,970,012 + AO353_27295 0.68 -1.3
5,970,013 - AO353_27295 0.68 -1.3
5,970,013 - AO353_27295 0.68 -0.3
5,970,013 - AO353_27295 0.68 +0.8
5,970,013 - AO353_27295 0.68 -0.4
5,970,013 - AO353_27295 0.68 -0.2
5,970,013 - AO353_27295 0.68 -0.2
5,970,213 + AO353_27295 0.81 -0.3
5,970,213 + AO353_27295 0.81 +1.8
5,970,259 + AO353_27295 0.84 -1.4
5,970,466 + +0.7
5,970,467 - -0.6
5,970,506 + +0.2
5,970,506 + -0.1
5,970,506 + -0.5
5,970,506 + -1.9
5,970,507 - -0.2
5,970,507 - -0.3
5,970,507 - -1.6
5,970,507 - -0.7
5,970,524 - -1.8
5,970,615 - AO353_27300 0.19 -1.7
5,970,742 - AO353_27300 0.40 -1.5
5,970,817 - AO353_27300 0.52 -0.3
5,970,830 + AO353_27300 0.55 -0.9
5,970,890 + AO353_27300 0.65 -1.7
5,970,890 + AO353_27300 0.65 +0.8
5,970,890 + AO353_27300 0.65 -1.7
5,970,890 + AO353_27300 0.65 +0.7
5,970,890 + AO353_27300 0.65 +0.1
5,970,890 + AO353_27300 0.65 +0.3
5,970,890 + AO353_27300 0.65 -0.5
5,970,890 + AO353_27300 0.65 -0.2
5,970,890 + AO353_27300 0.65 +1.0
5,970,890 + AO353_27300 0.65 -0.7
5,970,891 - AO353_27300 0.65 -0.3
5,970,891 - AO353_27300 0.65 +0.3
5,970,891 - AO353_27300 0.65 -1.2
5,970,891 - AO353_27300 0.65 -1.2
5,970,891 - AO353_27300 0.65 -0.9
5,970,891 - AO353_27300 0.65 -1.2
5,970,891 - AO353_27300 0.65 -0.2
5,970,891 - AO353_27300 0.65 -0.1
5,970,891 - AO353_27300 0.65 +1.3
5,970,891 - AO353_27300 0.65 -1.2
5,970,891 - AO353_27300 0.65 -1.7
5,970,893 + AO353_27300 0.65 -1.1
5,970,893 + AO353_27300 0.65 -1.7
5,970,893 + AO353_27300 0.65 -1.7
5,970,893 + AO353_27300 0.65 -1.4
5,970,893 + AO353_27300 0.65 -0.7
5,970,894 - AO353_27300 0.65 -0.9
5,970,894 - AO353_27300 0.65 +0.8
5,970,894 - AO353_27300 0.65 -1.1
5,970,894 - AO353_27300 0.65 -1.9
5,970,894 - AO353_27300 0.65 -1.3
5,970,894 - AO353_27300 0.65 -1.3
5,970,894 - AO353_27300 0.65 -1.2
5,971,010 + AO353_27300 0.84 -0.6
5,971,010 + AO353_27300 0.84 +0.2
5,971,010 + AO353_27300 0.84 +0.0
5,971,010 + AO353_27300 0.84 +0.0
5,971,011 - AO353_27300 0.84 -2.2
5,971,093 + +0.1
5,971,094 - +0.1
5,971,094 - -0.6
5,971,128 + -0.7
5,971,129 - -1.1
5,971,412 + AO353_27305 0.35 -0.7
5,971,413 - AO353_27305 0.35 -0.7
5,971,502 - AO353_27305 0.45 -0.0
5,971,502 - AO353_27305 0.45 +0.3
5,971,506 + AO353_27305 0.45 +0.4
5,971,506 + AO353_27305 0.45 -0.1
5,971,506 + AO353_27305 0.45 +0.8
5,971,506 + AO353_27305 0.45 +0.1
5,971,506 + AO353_27305 0.45 -0.0
5,971,507 - AO353_27305 0.45 -1.7
5,971,507 - AO353_27305 0.45 +0.0
5,971,507 - AO353_27305 0.45 +1.1
5,971,575 + AO353_27305 0.53 -0.3
5,971,575 + AO353_27305 0.53 +0.7
5,971,575 + AO353_27305 0.53 +0.4
5,971,575 + AO353_27305 0.53 +0.3
5,971,575 + AO353_27305 0.53 -0.6
5,971,575 + AO353_27305 0.53 +0.1
5,971,575 + AO353_27305 0.53 -1.1
5,971,575 + AO353_27305 0.53 +2.1
5,971,575 + AO353_27305 0.53 +0.0
5,971,576 - AO353_27305 0.53 -0.7
5,971,576 - AO353_27305 0.53 +0.4
5,971,576 - AO353_27305 0.53 -0.6
5,971,576 - AO353_27305 0.53 -0.9
5,971,576 - AO353_27305 0.53 +0.1
5,971,611 + AO353_27305 0.57 +1.8
5,971,612 - AO353_27305 0.57 +1.5
5,971,612 - AO353_27305 0.57 -0.1
5,971,751 + AO353_27305 0.73 +0.1
5,971,752 - AO353_27305 0.73 +0.3
5,971,752 - AO353_27305 0.73 +1.0
5,971,818 + AO353_27305 0.81 -0.3
5,971,818 + AO353_27305 0.81 +0.7
5,971,818 + AO353_27305 0.81 -0.1
5,971,818 + AO353_27305 0.81 +1.8
5,971,818 + AO353_27305 0.81 +0.0
5,971,818 + AO353_27305 0.81 +0.3
5,971,819 - AO353_27305 0.81 -1.8
5,971,819 - AO353_27305 0.81 +0.4
5,971,819 - -1.7
5,971,819 - AO353_27305 0.81 +1.3
5,971,819 - AO353_27305 0.81 +0.7
5,971,819 - AO353_27305 0.81 +0.3
5,971,819 - AO353_27305 0.81 +0.9
5,971,887 + AO353_27305 0.89 +0.3
5,971,887 + AO353_27305 0.89 +0.8
5,971,887 + AO353_27305 0.89 -1.7
5,971,888 - AO353_27305 0.89 -0.0
5,971,917 + -1.7
5,971,917 + +0.3
5,971,917 + -0.7
5,971,917 + -0.3
5,971,917 + -0.3
5,971,918 - +0.5
5,971,918 - +1.1
5,971,981 + -1.3
5,971,981 + +1.3
5,971,987 + -0.5
5,971,987 + -0.3
5,971,987 + -0.5
5,971,988 - +0.4
5,971,988 - +0.3
5,971,994 - +0.1

Or see this region's nucleotide sequence