Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26810

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26805 and AO353_26810 overlap by 4 nucleotidesAO353_26810 and AO353_26815 are separated by 316 nucleotidesAO353_26815 and AO353_26820 overlap by 23 nucleotides AO353_26805: AO353_26805 - (2Fe-2S)-binding protein, at 5,871,732 to 5,873,141 _26805 AO353_26810: AO353_26810 - (2Fe-2S)-binding protein, at 5,873,138 to 5,873,452 _26810 AO353_26815: AO353_26815 - transcriptional regulator, at 5,873,769 to 5,874,452 _26815 AO353_26820: AO353_26820 - histidine kinase, at 5,874,430 to 5,875,824 _26820 Position (kb) 5873 5874Strain fitness (log2 ratio) -2 -1 0 1 2at 5872.214 kb on + strandat 5872.214 kb on + strand, within AO353_26805at 5872.214 kb on + strand, within AO353_26805at 5872.215 kb on - strand, within AO353_26805at 5872.215 kb on - strand, within AO353_26805at 5872.259 kb on + strand, within AO353_26805at 5872.260 kb on - strand, within AO353_26805at 5872.280 kb on - strand, within AO353_26805at 5872.280 kb on - strand, within AO353_26805at 5872.341 kb on - strand, within AO353_26805at 5872.417 kb on + strand, within AO353_26805at 5872.417 kb on + strand, within AO353_26805at 5872.418 kb on - strand, within AO353_26805at 5872.418 kb on - strand, within AO353_26805at 5872.744 kb on - strand, within AO353_26805at 5872.744 kb on - strand, within AO353_26805at 5872.744 kb on - strand, within AO353_26805at 5872.776 kb on + strand, within AO353_26805at 5872.782 kb on - strand, within AO353_26805at 5872.982 kb on - strand, within AO353_26805at 5872.982 kb on - strand, within AO353_26805at 5872.982 kb on - strand, within AO353_26805at 5872.982 kb on - strand, within AO353_26805at 5873.017 kb on + strandat 5873.018 kb on - strandat 5873.141 kb on + strandat 5873.141 kb on + strandat 5873.141 kb on + strandat 5873.141 kb on + strandat 5873.142 kb on - strandat 5873.142 kb on - strandat 5873.142 kb on - strandat 5873.142 kb on - strandat 5873.142 kb on - strandat 5873.277 kb on + strand, within AO353_26810at 5873.305 kb on + strand, within AO353_26810at 5873.305 kb on + strand, within AO353_26810at 5873.401 kb on + strand, within AO353_26810at 5873.401 kb on + strand, within AO353_26810at 5873.401 kb on + strand, within AO353_26810at 5873.402 kb on - strand, within AO353_26810at 5873.402 kb on - strand, within AO353_26810at 5873.402 kb on - strandat 5873.402 kb on - strand, within AO353_26810at 5873.434 kb on + strandat 5873.542 kb on + strandat 5873.542 kb on + strandat 5873.542 kb on + strandat 5873.542 kb on + strandat 5873.543 kb on - strandat 5873.543 kb on - strandat 5873.543 kb on - strandat 5873.556 kb on - strandat 5873.574 kb on + strandat 5873.580 kb on - strandat 5873.586 kb on + strandat 5873.681 kb on - strandat 5873.701 kb on + strandat 5873.702 kb on - strandat 5873.742 kb on + strandat 5873.743 kb on - strandat 5873.743 kb on - strandat 5873.743 kb on - strandat 5873.743 kb on - strandat 5873.751 kb on + strandat 5873.751 kb on + strandat 5873.751 kb on + strandat 5873.905 kb on - strand, within AO353_26815at 5874.063 kb on + strand, within AO353_26815at 5874.144 kb on + strand, within AO353_26815at 5874.144 kb on + strand, within AO353_26815at 5874.145 kb on - strand, within AO353_26815at 5874.145 kb on - strand, within AO353_26815at 5874.240 kb on + strand, within AO353_26815at 5874.240 kb on + strand, within AO353_26815at 5874.241 kb on - strand, within AO353_26815at 5874.429 kb on + strandat 5874.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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5,872,214 + +1.6
5,872,214 + AO353_26805 0.34 +1.2
5,872,214 + AO353_26805 0.34 +0.2
5,872,215 - AO353_26805 0.34 +1.1
5,872,215 - AO353_26805 0.34 -0.4
5,872,259 + AO353_26805 0.37 +0.5
5,872,260 - AO353_26805 0.37 -1.2
5,872,280 - AO353_26805 0.39 +0.4
5,872,280 - AO353_26805 0.39 +1.2
5,872,341 - AO353_26805 0.43 -0.5
5,872,417 + AO353_26805 0.49 -2.4
5,872,417 + AO353_26805 0.49 -0.1
5,872,418 - AO353_26805 0.49 +2.0
5,872,418 - AO353_26805 0.49 +0.9
5,872,744 - AO353_26805 0.72 +0.2
5,872,744 - AO353_26805 0.72 +1.2
5,872,744 - AO353_26805 0.72 +1.2
5,872,776 + AO353_26805 0.74 -1.6
5,872,782 - AO353_26805 0.74 -0.1
5,872,982 - AO353_26805 0.89 -0.5
5,872,982 - AO353_26805 0.89 -1.4
5,872,982 - AO353_26805 0.89 +0.6
5,872,982 - AO353_26805 0.89 +0.6
5,873,017 + -1.8
5,873,018 - +0.0
5,873,141 + +0.5
5,873,141 + +0.1
5,873,141 + -0.5
5,873,141 + +0.2
5,873,142 - +0.5
5,873,142 - -1.1
5,873,142 - +0.6
5,873,142 - +0.5
5,873,142 - -1.2
5,873,277 + AO353_26810 0.44 -0.6
5,873,305 + AO353_26810 0.53 -1.2
5,873,305 + AO353_26810 0.53 -0.2
5,873,401 + AO353_26810 0.83 -1.4
5,873,401 + AO353_26810 0.83 -1.6
5,873,401 + AO353_26810 0.83 -0.4
5,873,402 - AO353_26810 0.84 -0.0
5,873,402 - AO353_26810 0.84 -1.5
5,873,402 - +0.2
5,873,402 - AO353_26810 0.84 -1.5
5,873,434 + +0.2
5,873,542 + +0.8
5,873,542 + -0.1
5,873,542 + -1.6
5,873,542 + +0.5
5,873,543 - +1.4
5,873,543 - -0.3
5,873,543 - -1.0
5,873,556 - -0.8
5,873,574 + -0.6
5,873,580 - -0.6
5,873,586 + +0.6
5,873,681 - +0.5
5,873,701 + -0.1
5,873,702 - +1.2
5,873,742 + -0.5
5,873,743 - +0.5
5,873,743 - -0.7
5,873,743 - -0.6
5,873,743 - -0.4
5,873,751 + -1.1
5,873,751 + -0.9
5,873,751 + +0.0
5,873,905 - AO353_26815 0.20 -0.0
5,874,063 + AO353_26815 0.43 +0.9
5,874,144 + AO353_26815 0.55 -1.9
5,874,144 + AO353_26815 0.55 -1.4
5,874,145 - AO353_26815 0.55 -0.8
5,874,145 - AO353_26815 0.55 +0.9
5,874,240 + AO353_26815 0.69 +0.1
5,874,240 + AO353_26815 0.69 +0.4
5,874,241 - AO353_26815 0.69 +0.1
5,874,429 + -0.1
5,874,450 + -0.6

Or see this region's nucleotide sequence