Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23315

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23305 and AO353_23310 are separated by 133 nucleotidesAO353_23310 and AO353_23315 are separated by 134 nucleotidesAO353_23315 and AO353_23320 are separated by 150 nucleotidesAO353_23320 and AO353_23325 are separated by 231 nucleotides AO353_23305: AO353_23305 - aspartate carbamoyltransferase, at 5,112,426 to 5,112,953 _23305 AO353_23310: AO353_23310 - permease, at 5,113,087 to 5,113,236 _23310 AO353_23315: AO353_23315 - hypothetical protein, at 5,113,371 to 5,113,661 _23315 AO353_23320: AO353_23320 - hypothetical protein, at 5,113,812 to 5,114,084 _23320 AO353_23325: AO353_23325 - hypothetical protein, at 5,114,316 to 5,114,912 _23325 Position (kb) 5113 5114Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5112.388 kb on - strandat 5112.388 kb on - strandat 5112.388 kb on - strandat 5112.409 kb on + strandat 5112.409 kb on + strandat 5112.409 kb on + strandat 5112.409 kb on + strandat 5112.409 kb on + strandat 5112.409 kb on + strandat 5112.410 kb on - strandat 5112.632 kb on + strand, within AO353_23305at 5112.632 kb on + strand, within AO353_23305at 5112.633 kb on - strand, within AO353_23305at 5112.798 kb on + strand, within AO353_23305at 5112.799 kb on - strand, within AO353_23305at 5112.799 kb on - strand, within AO353_23305at 5112.831 kb on + strand, within AO353_23305at 5112.831 kb on + strand, within AO353_23305at 5112.831 kb on + strand, within AO353_23305at 5112.831 kb on + strand, within AO353_23305at 5112.831 kb on + strand, within AO353_23305at 5112.831 kb on + strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.832 kb on - strand, within AO353_23305at 5112.834 kb on - strand, within AO353_23305at 5112.834 kb on - strand, within AO353_23305at 5112.834 kb on - strand, within AO353_23305at 5112.834 kb on - strand, within AO353_23305at 5112.834 kb on - strand, within AO353_23305at 5112.834 kb on - strand, within AO353_23305at 5112.911 kb on + strandat 5112.911 kb on + strandat 5113.023 kb on + strandat 5113.042 kb on - strandat 5113.189 kb on + strand, within AO353_23310at 5113.190 kb on - strand, within AO353_23310at 5113.281 kb on - strandat 5113.283 kb on + strandat 5113.313 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.370 kb on + strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.371 kb on - strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.374 kb on + strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.375 kb on - strandat 5113.384 kb on + strandat 5113.384 kb on + strandat 5113.384 kb on + strandat 5113.385 kb on - strandat 5113.385 kb on - strandat 5113.392 kb on + strandat 5113.392 kb on + strandat 5113.393 kb on - strandat 5113.429 kb on + strand, within AO353_23315at 5113.429 kb on + strand, within AO353_23315at 5113.429 kb on + strand, within AO353_23315at 5113.430 kb on - strand, within AO353_23315at 5113.488 kb on + strand, within AO353_23315at 5113.489 kb on - strand, within AO353_23315at 5113.604 kb on + strand, within AO353_23315at 5113.659 kb on + strandat 5113.686 kb on + strandat 5113.686 kb on + strandat 5113.686 kb on + strandat 5113.687 kb on - strandat 5113.687 kb on - strandat 5113.687 kb on - strandat 5113.696 kb on + strandat 5113.696 kb on + strandat 5113.697 kb on - strandat 5113.700 kb on + strandat 5113.700 kb on + strandat 5113.700 kb on + strandat 5113.700 kb on + strandat 5113.701 kb on - strandat 5113.701 kb on - strandat 5113.701 kb on - strandat 5113.701 kb on - strandat 5113.701 kb on - strandat 5113.701 kb on - strandat 5113.701 kb on - strandat 5113.764 kb on + strandat 5113.787 kb on - strandat 5113.787 kb on - strandat 5113.787 kb on - strandat 5113.949 kb on + strand, within AO353_23320at 5113.985 kb on - strand, within AO353_23320at 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.074 kb on + strandat 5114.078 kb on + strandat 5114.078 kb on + strandat 5114.078 kb on + strandat 5114.078 kb on + strandat 5114.107 kb on + strandat 5114.108 kb on - strandat 5114.108 kb on - strandat 5114.168 kb on + strandat 5114.168 kb on + strandat 5114.168 kb on + strandat 5114.169 kb on - strandat 5114.169 kb on - strandat 5114.169 kb on - strandat 5114.169 kb on - strandat 5114.169 kb on - strandat 5114.169 kb on - strandat 5114.169 kb on - strandat 5114.170 kb on + strandat 5114.170 kb on + strandat 5114.170 kb on + strandat 5114.170 kb on + strandat 5114.170 kb on + strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.171 kb on - strandat 5114.218 kb on + strandat 5114.219 kb on - strandat 5114.227 kb on + strandat 5114.227 kb on + strandat 5114.227 kb on + strandat 5114.228 kb on - strandat 5114.228 kb on - strandat 5114.262 kb on + strandat 5114.262 kb on + strandat 5114.262 kb on + strandat 5114.262 kb on + strandat 5114.262 kb on + strandat 5114.263 kb on - strandat 5114.279 kb on + strandat 5114.279 kb on + strandat 5114.279 kb on + strandat 5114.280 kb on - strandat 5114.302 kb on + strandat 5114.302 kb on + strandat 5114.302 kb on + strandat 5114.302 kb on + strandat 5114.302 kb on + strandat 5114.302 kb on + strandat 5114.303 kb on - strandat 5114.303 kb on - strandat 5114.303 kb on - strandat 5114.303 kb on - strandat 5114.304 kb on + strandat 5114.304 kb on + strandat 5114.304 kb on + strandat 5114.304 kb on + strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.305 kb on - strandat 5114.443 kb on + strand, within AO353_23325at 5114.443 kb on + strand, within AO353_23325at 5114.444 kb on - strand, within AO353_23325at 5114.444 kb on - strand, within AO353_23325at 5114.444 kb on - strandat 5114.444 kb on - strand, within AO353_23325at 5114.450 kb on + strand, within AO353_23325at 5114.476 kb on + strand, within AO353_23325at 5114.526 kb on + strand, within AO353_23325at 5114.526 kb on + strand, within AO353_23325at 5114.526 kb on + strand, within AO353_23325at 5114.527 kb on - strand, within AO353_23325at 5114.527 kb on - strand, within AO353_23325at 5114.600 kb on + strand, within AO353_23325at 5114.600 kb on + strand, within AO353_23325at 5114.601 kb on - strand, within AO353_23325

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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5,112,388 - +1.0
5,112,388 - -0.5
5,112,388 - -0.4
5,112,409 + -0.4
5,112,409 + +1.2
5,112,409 + -0.8
5,112,409 + +0.7
5,112,409 + +0.7
5,112,409 + -0.2
5,112,410 - -1.3
5,112,632 + AO353_23305 0.39 +1.2
5,112,632 + AO353_23305 0.39 +0.6
5,112,633 - AO353_23305 0.39 -0.2
5,112,798 + AO353_23305 0.70 -0.6
5,112,799 - AO353_23305 0.71 +0.9
5,112,799 - AO353_23305 0.71 +0.2
5,112,831 + AO353_23305 0.77 -1.0
5,112,831 + AO353_23305 0.77 -0.3
5,112,831 + AO353_23305 0.77 +0.1
5,112,831 + AO353_23305 0.77 -1.4
5,112,831 + AO353_23305 0.77 -2.0
5,112,831 + AO353_23305 0.77 -1.6
5,112,832 - AO353_23305 0.77 +0.1
5,112,832 - AO353_23305 0.77 -1.0
5,112,832 - AO353_23305 0.77 -2.5
5,112,832 - AO353_23305 0.77 +0.6
5,112,832 - AO353_23305 0.77 +0.2
5,112,832 - AO353_23305 0.77 +1.2
5,112,832 - AO353_23305 0.77 -0.6
5,112,832 - AO353_23305 0.77 -0.4
5,112,832 - AO353_23305 0.77 -1.1
5,112,832 - AO353_23305 0.77 +0.3
5,112,834 - AO353_23305 0.77 -0.2
5,112,834 - AO353_23305 0.77 +0.9
5,112,834 - AO353_23305 0.77 +0.2
5,112,834 - AO353_23305 0.77 -0.2
5,112,834 - AO353_23305 0.77 +1.3
5,112,834 - AO353_23305 0.77 +0.9
5,112,911 + -0.1
5,112,911 + +0.5
5,113,023 + +0.7
5,113,042 - -0.8
5,113,189 + AO353_23310 0.68 -0.4
5,113,190 - AO353_23310 0.69 +1.2
5,113,281 - +0.6
5,113,283 + -0.6
5,113,313 + -1.0
5,113,370 + +0.4
5,113,370 + +0.2
5,113,370 + +1.2
5,113,370 + -0.4
5,113,370 + +1.0
5,113,370 + +1.7
5,113,370 + -0.8
5,113,370 + -0.8
5,113,371 - -0.8
5,113,371 - +0.9
5,113,371 - +0.4
5,113,371 - +0.8
5,113,371 - -0.1
5,113,371 - -0.4
5,113,371 - +0.4
5,113,371 - -0.4
5,113,371 - -0.5
5,113,371 - +1.0
5,113,371 - -1.1
5,113,374 + +0.2
5,113,374 + +1.0
5,113,374 + -0.8
5,113,374 + -0.0
5,113,374 + +0.8
5,113,374 + -2.0
5,113,374 + -0.5
5,113,374 + -0.2
5,113,374 + +0.7
5,113,375 - +1.2
5,113,375 - -0.2
5,113,375 - -1.0
5,113,375 - +0.6
5,113,375 - -1.1
5,113,375 - -0.1
5,113,375 - +0.0
5,113,375 - -2.7
5,113,375 - +0.2
5,113,384 + +0.4
5,113,384 + +0.4
5,113,384 + +0.6
5,113,385 - +1.2
5,113,385 - -0.1
5,113,392 + -0.7
5,113,392 + +0.1
5,113,393 - -0.7
5,113,429 + AO353_23315 0.20 -0.7
5,113,429 + AO353_23315 0.20 -1.3
5,113,429 + AO353_23315 0.20 -1.6
5,113,430 - AO353_23315 0.20 -0.4
5,113,488 + AO353_23315 0.40 +1.2
5,113,489 - AO353_23315 0.41 -0.6
5,113,604 + AO353_23315 0.80 +0.2
5,113,659 + -0.3
5,113,686 + +1.4
5,113,686 + -1.3
5,113,686 + +0.2
5,113,687 - -1.1
5,113,687 - +0.9
5,113,687 - +0.4
5,113,696 + -0.1
5,113,696 + -0.4
5,113,697 - -0.6
5,113,700 + -0.8
5,113,700 + -0.1
5,113,700 + -0.5
5,113,700 + +1.7
5,113,701 - +1.6
5,113,701 - -1.1
5,113,701 - +0.8
5,113,701 - -0.8
5,113,701 - +0.2
5,113,701 - -1.5
5,113,701 - +0.2
5,113,764 + -0.6
5,113,787 - -0.4
5,113,787 - +0.4
5,113,787 - -1.0
5,113,949 + AO353_23320 0.50 +0.4
5,113,985 - AO353_23320 0.63 -0.2
5,114,074 + +0.3
5,114,074 + -1.0
5,114,074 + -0.4
5,114,074 + +0.2
5,114,074 + -1.8
5,114,074 + +0.4
5,114,074 + +0.9
5,114,074 + +1.8
5,114,074 + +0.4
5,114,074 + +0.8
5,114,074 + +0.5
5,114,074 + -0.2
5,114,074 + +0.2
5,114,074 + -0.4
5,114,074 + -0.3
5,114,074 + -0.5
5,114,074 + +0.9
5,114,074 + -0.8
5,114,078 + -0.1
5,114,078 + -0.7
5,114,078 + -0.1
5,114,078 + +0.8
5,114,107 + +1.5
5,114,108 - -0.3
5,114,108 - -0.7
5,114,168 + +1.1
5,114,168 + +1.0
5,114,168 + +0.3
5,114,169 - +0.1
5,114,169 - +0.5
5,114,169 - +1.4
5,114,169 - -0.6
5,114,169 - +0.6
5,114,169 - -0.4
5,114,169 - +0.4
5,114,170 + -0.2
5,114,170 + -0.6
5,114,170 + -0.6
5,114,170 + +1.0
5,114,170 + +1.0
5,114,171 - -0.2
5,114,171 - -0.3
5,114,171 - +0.2
5,114,171 - +1.7
5,114,171 - +0.6
5,114,171 - -0.7
5,114,171 - +0.3
5,114,171 - +0.9
5,114,171 - -1.1
5,114,218 + -0.7
5,114,219 - -0.4
5,114,227 + -0.8
5,114,227 + +1.3
5,114,227 + -0.1
5,114,228 - +0.6
5,114,228 - +0.7
5,114,262 + +0.0
5,114,262 + -0.3
5,114,262 + -1.3
5,114,262 + +1.0
5,114,262 + -0.5
5,114,263 - -0.4
5,114,279 + +0.6
5,114,279 + -1.0
5,114,279 + +0.5
5,114,280 - -0.0
5,114,302 + -2.0
5,114,302 + +0.2
5,114,302 + -0.6
5,114,302 + +1.7
5,114,302 + +0.6
5,114,302 + -0.5
5,114,303 - -0.0
5,114,303 - -0.4
5,114,303 - -0.7
5,114,303 - -0.6
5,114,304 + -0.4
5,114,304 + -0.4
5,114,304 + +0.1
5,114,304 + -0.5
5,114,305 - -0.3
5,114,305 - -0.4
5,114,305 - +0.2
5,114,305 - +2.8
5,114,305 - +0.4
5,114,305 - +2.8
5,114,305 - +0.7
5,114,305 - -0.4
5,114,305 - +1.2
5,114,443 + AO353_23325 0.21 +0.2
5,114,443 + AO353_23325 0.21 -1.4
5,114,444 - AO353_23325 0.21 -0.8
5,114,444 - AO353_23325 0.21 +0.7
5,114,444 - -1.1
5,114,444 - AO353_23325 0.21 +0.4
5,114,450 + AO353_23325 0.22 -2.2
5,114,476 + AO353_23325 0.27 -0.2
5,114,526 + AO353_23325 0.35 -0.8
5,114,526 + AO353_23325 0.35 -0.8
5,114,526 + AO353_23325 0.35 -0.5
5,114,527 - AO353_23325 0.35 -0.6
5,114,527 - AO353_23325 0.35 -1.6
5,114,600 + AO353_23325 0.48 -1.0
5,114,600 + AO353_23325 0.48 +0.6
5,114,601 - AO353_23325 0.48 -0.3

Or see this region's nucleotide sequence