Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23275 and AO353_23280 are separated by 149 nucleotides AO353_23280 and AO353_23285 are separated by 366 nucleotides AO353_23285 and AO353_23290 are separated by 298 nucleotides
AO353_23275: AO353_23275 - lysine transporter LysE, at 5,105,797 to 5,106,417
_23275
AO353_23280: AO353_23280 - hypothetical protein, at 5,106,567 to 5,106,902
_23280
AO353_23285: AO353_23285 - hypothetical protein, at 5,107,269 to 5,107,628
_23285
AO353_23290: AO353_23290 - cystathionine beta-synthase, at 5,107,927 to 5,109,303
_23290
Position (kb)
5107
5108 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.449 kb on - strand at 5106.449 kb on - strand at 5106.470 kb on - strand at 5106.499 kb on + strand at 5106.499 kb on + strand at 5106.500 kb on - strand at 5106.511 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.517 kb on - strand at 5106.517 kb on - strand at 5106.517 kb on - strand at 5106.560 kb on + strand at 5106.560 kb on + strand at 5106.560 kb on + strand at 5106.561 kb on - strand at 5106.598 kb on + strand at 5106.598 kb on + strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.654 kb on + strand, within AO353_23280 at 5106.654 kb on + strand, within AO353_23280 at 5106.654 kb on + strand, within AO353_23280 at 5106.655 kb on - strand, within AO353_23280 at 5106.655 kb on - strand, within AO353_23280 at 5106.655 kb on - strand, within AO353_23280 at 5106.669 kb on + strand, within AO353_23280 at 5106.669 kb on + strand, within AO353_23280 at 5106.670 kb on - strand, within AO353_23280 at 5106.670 kb on - strand, within AO353_23280 at 5106.670 kb on - strand, within AO353_23280 at 5106.900 kb on + strand at 5106.900 kb on + strand at 5106.901 kb on - strand at 5106.901 kb on - strand at 5106.928 kb on + strand at 5106.977 kb on - strand at 5107.098 kb on + strand at 5107.098 kb on + strand at 5107.123 kb on + strand at 5107.187 kb on + strand at 5107.187 kb on + strand at 5107.188 kb on - strand at 5107.188 kb on - strand at 5107.191 kb on + strand at 5107.191 kb on + strand at 5107.191 kb on + strand at 5107.192 kb on - strand at 5107.192 kb on - strand at 5107.192 kb on - strand at 5107.192 kb on - strand at 5107.291 kb on + strand at 5107.291 kb on + strand at 5107.291 kb on + strand at 5107.466 kb on + strand, within AO353_23285 at 5107.467 kb on - strand, within AO353_23285 at 5107.467 kb on - strand, within AO353_23285 at 5107.467 kb on - strand, within AO353_23285 at 5107.539 kb on - strand, within AO353_23285 at 5107.541 kb on - strand, within AO353_23285 at 5107.601 kb on + strand at 5107.602 kb on - strand at 5107.704 kb on + strand at 5107.704 kb on + strand at 5107.705 kb on - strand at 5107.705 kb on - strand at 5107.747 kb on + strand at 5107.832 kb on + strand at 5107.833 kb on - strand at 5107.833 kb on - strand at 5107.971 kb on + strand at 5108.227 kb on - strand, within AO353_23290 at 5108.309 kb on - strand, within AO353_23290 at 5108.312 kb on - strand, within AO353_23290 at 5108.573 kb on - strand, within AO353_23290
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 5,106,399 + +0.0 5,106,399 + -0.3 5,106,399 + +0.3 5,106,399 + -0.8 5,106,399 + -2.6 5,106,399 + +0.3 5,106,400 - -0.3 5,106,400 - +1.0 5,106,400 - +1.0 5,106,400 - +1.2 5,106,400 - +1.0 5,106,400 - -0.0 5,106,449 - -0.3 5,106,449 - -0.3 5,106,470 - +1.2 5,106,499 + -0.3 5,106,499 + +1.2 5,106,500 - +0.5 5,106,511 + +1.8 5,106,516 + +0.2 5,106,516 + +2.5 5,106,516 + +0.7 5,106,516 + +0.7 5,106,516 + -0.4 5,106,516 + -0.0 5,106,517 - -0.4 5,106,517 - -1.8 5,106,517 - -0.8 5,106,560 + -0.9 5,106,560 + -0.3 5,106,560 + -0.5 5,106,561 - -0.1 5,106,598 + +0.3 5,106,598 + +0.6 5,106,599 - -0.4 5,106,599 - -0.1 5,106,599 - +1.7 5,106,599 - -0.1 5,106,599 - -1.7 5,106,599 - -0.4 5,106,654 + AO353_23280 0.26 -0.1 5,106,654 + AO353_23280 0.26 +0.9 5,106,654 + AO353_23280 0.26 +0.1 5,106,655 - AO353_23280 0.26 -2.4 5,106,655 - AO353_23280 0.26 +1.2 5,106,655 - AO353_23280 0.26 -0.3 5,106,669 + AO353_23280 0.30 -1.0 5,106,669 + AO353_23280 0.30 +0.6 5,106,670 - AO353_23280 0.31 -0.8 5,106,670 - AO353_23280 0.31 +1.2 5,106,670 - AO353_23280 0.31 -1.2 5,106,900 + +1.0 5,106,900 + -0.4 5,106,901 - -0.6 5,106,901 - +0.2 5,106,928 + -0.8 5,106,977 - -1.1 5,107,098 + +0.0 5,107,098 + -1.8 5,107,123 + -0.9 5,107,187 + -0.8 5,107,187 + -0.3 5,107,188 - -1.3 5,107,188 - -0.3 5,107,191 + +0.9 5,107,191 + +0.2 5,107,191 + -1.2 5,107,192 - -0.8 5,107,192 - -0.7 5,107,192 - -0.3 5,107,192 - +1.1 5,107,291 + +0.1 5,107,291 + +0.1 5,107,291 + -1.1 5,107,466 + AO353_23285 0.55 -1.1 5,107,467 - AO353_23285 0.55 -1.6 5,107,467 - AO353_23285 0.55 -0.6 5,107,467 - AO353_23285 0.55 +1.2 5,107,539 - AO353_23285 0.75 -1.0 5,107,541 - AO353_23285 0.76 -0.8 5,107,601 + -1.7 5,107,602 - +0.4 5,107,704 + -0.6 5,107,704 + -1.8 5,107,705 - +0.4 5,107,705 - -1.0 5,107,747 + +0.6 5,107,832 + -0.1 5,107,833 - -0.8 5,107,833 - -2.0 5,107,971 + -0.1 5,108,227 - AO353_23290 0.22 +0.1 5,108,309 - AO353_23290 0.28 -1.3 5,108,312 - AO353_23290 0.28 +1.2 5,108,573 - AO353_23290 0.47 +1.8
Or see this region's nucleotide sequence