Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23285

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23275 and AO353_23280 are separated by 149 nucleotidesAO353_23280 and AO353_23285 are separated by 366 nucleotidesAO353_23285 and AO353_23290 are separated by 298 nucleotides AO353_23275: AO353_23275 - lysine transporter LysE, at 5,105,797 to 5,106,417 _23275 AO353_23280: AO353_23280 - hypothetical protein, at 5,106,567 to 5,106,902 _23280 AO353_23285: AO353_23285 - hypothetical protein, at 5,107,269 to 5,107,628 _23285 AO353_23290: AO353_23290 - cystathionine beta-synthase, at 5,107,927 to 5,109,303 _23290 Position (kb) 5107 5108Strain fitness (log2 ratio) -2 -1 0 1 2at 5106.399 kb on + strandat 5106.399 kb on + strandat 5106.399 kb on + strandat 5106.399 kb on + strandat 5106.399 kb on + strandat 5106.399 kb on + strandat 5106.400 kb on - strandat 5106.400 kb on - strandat 5106.400 kb on - strandat 5106.400 kb on - strandat 5106.400 kb on - strandat 5106.400 kb on - strandat 5106.449 kb on - strandat 5106.449 kb on - strandat 5106.470 kb on - strandat 5106.499 kb on + strandat 5106.499 kb on + strandat 5106.500 kb on - strandat 5106.511 kb on + strandat 5106.516 kb on + strandat 5106.516 kb on + strandat 5106.516 kb on + strandat 5106.516 kb on + strandat 5106.516 kb on + strandat 5106.516 kb on + strandat 5106.517 kb on - strandat 5106.517 kb on - strandat 5106.517 kb on - strandat 5106.560 kb on + strandat 5106.560 kb on + strandat 5106.560 kb on + strandat 5106.561 kb on - strandat 5106.598 kb on + strandat 5106.598 kb on + strandat 5106.599 kb on - strandat 5106.599 kb on - strandat 5106.599 kb on - strandat 5106.599 kb on - strandat 5106.599 kb on - strandat 5106.599 kb on - strandat 5106.654 kb on + strand, within AO353_23280at 5106.654 kb on + strand, within AO353_23280at 5106.654 kb on + strand, within AO353_23280at 5106.655 kb on - strand, within AO353_23280at 5106.655 kb on - strand, within AO353_23280at 5106.655 kb on - strand, within AO353_23280at 5106.669 kb on + strand, within AO353_23280at 5106.669 kb on + strand, within AO353_23280at 5106.670 kb on - strand, within AO353_23280at 5106.670 kb on - strand, within AO353_23280at 5106.670 kb on - strand, within AO353_23280at 5106.900 kb on + strandat 5106.900 kb on + strandat 5106.901 kb on - strandat 5106.901 kb on - strandat 5106.928 kb on + strandat 5106.977 kb on - strandat 5107.098 kb on + strandat 5107.098 kb on + strandat 5107.123 kb on + strandat 5107.187 kb on + strandat 5107.187 kb on + strandat 5107.188 kb on - strandat 5107.188 kb on - strandat 5107.191 kb on + strandat 5107.191 kb on + strandat 5107.191 kb on + strandat 5107.192 kb on - strandat 5107.192 kb on - strandat 5107.192 kb on - strandat 5107.192 kb on - strandat 5107.291 kb on + strandat 5107.291 kb on + strandat 5107.291 kb on + strandat 5107.466 kb on + strand, within AO353_23285at 5107.467 kb on - strand, within AO353_23285at 5107.467 kb on - strand, within AO353_23285at 5107.467 kb on - strand, within AO353_23285at 5107.539 kb on - strand, within AO353_23285at 5107.541 kb on - strand, within AO353_23285at 5107.601 kb on + strandat 5107.602 kb on - strandat 5107.704 kb on + strandat 5107.704 kb on + strandat 5107.705 kb on - strandat 5107.705 kb on - strandat 5107.747 kb on + strandat 5107.832 kb on + strandat 5107.833 kb on - strandat 5107.833 kb on - strandat 5107.971 kb on + strandat 5108.227 kb on - strand, within AO353_23290at 5108.309 kb on - strand, within AO353_23290at 5108.312 kb on - strand, within AO353_23290at 5108.573 kb on - strand, within AO353_23290

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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5,106,399 + +0.0
5,106,399 + -0.3
5,106,399 + +0.3
5,106,399 + -0.8
5,106,399 + -2.6
5,106,399 + +0.3
5,106,400 - -0.3
5,106,400 - +1.0
5,106,400 - +1.0
5,106,400 - +1.2
5,106,400 - +1.0
5,106,400 - -0.0
5,106,449 - -0.3
5,106,449 - -0.3
5,106,470 - +1.2
5,106,499 + -0.3
5,106,499 + +1.2
5,106,500 - +0.5
5,106,511 + +1.8
5,106,516 + +0.2
5,106,516 + +2.5
5,106,516 + +0.7
5,106,516 + +0.7
5,106,516 + -0.4
5,106,516 + -0.0
5,106,517 - -0.4
5,106,517 - -1.8
5,106,517 - -0.8
5,106,560 + -0.9
5,106,560 + -0.3
5,106,560 + -0.5
5,106,561 - -0.1
5,106,598 + +0.3
5,106,598 + +0.6
5,106,599 - -0.4
5,106,599 - -0.1
5,106,599 - +1.7
5,106,599 - -0.1
5,106,599 - -1.7
5,106,599 - -0.4
5,106,654 + AO353_23280 0.26 -0.1
5,106,654 + AO353_23280 0.26 +0.9
5,106,654 + AO353_23280 0.26 +0.1
5,106,655 - AO353_23280 0.26 -2.4
5,106,655 - AO353_23280 0.26 +1.2
5,106,655 - AO353_23280 0.26 -0.3
5,106,669 + AO353_23280 0.30 -1.0
5,106,669 + AO353_23280 0.30 +0.6
5,106,670 - AO353_23280 0.31 -0.8
5,106,670 - AO353_23280 0.31 +1.2
5,106,670 - AO353_23280 0.31 -1.2
5,106,900 + +1.0
5,106,900 + -0.4
5,106,901 - -0.6
5,106,901 - +0.2
5,106,928 + -0.8
5,106,977 - -1.1
5,107,098 + +0.0
5,107,098 + -1.8
5,107,123 + -0.9
5,107,187 + -0.8
5,107,187 + -0.3
5,107,188 - -1.3
5,107,188 - -0.3
5,107,191 + +0.9
5,107,191 + +0.2
5,107,191 + -1.2
5,107,192 - -0.8
5,107,192 - -0.7
5,107,192 - -0.3
5,107,192 - +1.1
5,107,291 + +0.1
5,107,291 + +0.1
5,107,291 + -1.1
5,107,466 + AO353_23285 0.55 -1.1
5,107,467 - AO353_23285 0.55 -1.6
5,107,467 - AO353_23285 0.55 -0.6
5,107,467 - AO353_23285 0.55 +1.2
5,107,539 - AO353_23285 0.75 -1.0
5,107,541 - AO353_23285 0.76 -0.8
5,107,601 + -1.7
5,107,602 - +0.4
5,107,704 + -0.6
5,107,704 + -1.8
5,107,705 - +0.4
5,107,705 - -1.0
5,107,747 + +0.6
5,107,832 + -0.1
5,107,833 - -0.8
5,107,833 - -2.0
5,107,971 + -0.1
5,108,227 - AO353_23290 0.22 +0.1
5,108,309 - AO353_23290 0.28 -1.3
5,108,312 - AO353_23290 0.28 +1.2
5,108,573 - AO353_23290 0.47 +1.8

Or see this region's nucleotide sequence