Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23085

Experiment: Chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_23080 and AO353_23085 are separated by 112 nucleotidesAO353_23085 and AO353_23090 are separated by 236 nucleotides AO353_23080: AO353_23080 - GntR family transcriptional regulator, at 5,065,814 to 5,067,148 _23080 AO353_23085: AO353_23085 - AraC family transcriptional regulator, at 5,067,261 to 5,067,875 _23085 AO353_23090: AO353_23090 - LysR family transcriptional regulator, at 5,068,112 to 5,069,005 _23090 Position (kb) 5067 5068Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5066.295 kb on + strand, within AO353_23080at 5066.296 kb on - strand, within AO353_23080at 5066.359 kb on - strand, within AO353_23080at 5066.472 kb on + strand, within AO353_23080at 5066.472 kb on + strand, within AO353_23080at 5066.690 kb on + strand, within AO353_23080at 5066.690 kb on + strand, within AO353_23080at 5066.690 kb on + strand, within AO353_23080at 5066.690 kb on + strand, within AO353_23080at 5066.691 kb on - strand, within AO353_23080at 5066.691 kb on - strand, within AO353_23080at 5066.691 kb on - strand, within AO353_23080at 5066.691 kb on - strand, within AO353_23080at 5066.855 kb on + strand, within AO353_23080at 5066.855 kb on + strand, within AO353_23080at 5066.865 kb on + strand, within AO353_23080at 5066.865 kb on + strand, within AO353_23080at 5066.866 kb on - strand, within AO353_23080at 5066.876 kb on - strand, within AO353_23080at 5066.918 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.953 kb on + strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5066.954 kb on - strand, within AO353_23080at 5067.003 kb on + strandat 5067.119 kb on + strandat 5067.119 kb on + strandat 5067.119 kb on + strandat 5067.120 kb on - strandat 5067.120 kb on - strandat 5067.120 kb on - strandat 5067.120 kb on - strandat 5067.130 kb on + strandat 5067.131 kb on - strandat 5067.131 kb on - strandat 5067.131 kb on - strandat 5067.131 kb on - strandat 5067.133 kb on - strandat 5067.157 kb on - strandat 5067.164 kb on - strandat 5067.164 kb on - strandat 5067.169 kb on - strandat 5067.182 kb on + strandat 5067.186 kb on + strandat 5067.195 kb on + strandat 5067.208 kb on + strandat 5067.208 kb on + strandat 5067.208 kb on + strandat 5067.209 kb on - strandat 5067.209 kb on - strandat 5067.209 kb on - strandat 5067.209 kb on - strandat 5067.291 kb on + strandat 5067.291 kb on + strandat 5067.291 kb on + strandat 5067.292 kb on - strandat 5067.292 kb on - strandat 5067.329 kb on + strand, within AO353_23085at 5067.329 kb on + strandat 5067.329 kb on + strand, within AO353_23085at 5067.329 kb on + strand, within AO353_23085at 5067.329 kb on + strand, within AO353_23085at 5067.330 kb on - strand, within AO353_23085at 5067.330 kb on - strand, within AO353_23085at 5067.330 kb on - strand, within AO353_23085at 5067.330 kb on - strand, within AO353_23085at 5067.506 kb on + strand, within AO353_23085at 5067.507 kb on - strand, within AO353_23085at 5067.601 kb on + strand, within AO353_23085at 5067.786 kb on + strand, within AO353_23085at 5067.816 kb on + strandat 5067.816 kb on + strandat 5067.816 kb on + strandat 5067.816 kb on + strandat 5067.816 kb on + strandat 5067.816 kb on + strandat 5067.816 kb on + strandat 5067.817 kb on - strandat 5067.817 kb on - strandat 5067.817 kb on - strandat 5067.849 kb on + strandat 5067.849 kb on + strandat 5067.849 kb on + strandat 5067.850 kb on - strandat 5067.904 kb on + strandat 5067.904 kb on + strandat 5067.904 kb on + strandat 5067.905 kb on - strandat 5067.918 kb on + strandat 5067.918 kb on + strandat 5067.919 kb on - strandat 5067.919 kb on - strandat 5067.919 kb on - strandat 5067.919 kb on - strandat 5067.949 kb on - strandat 5067.949 kb on - strandat 5067.949 kb on - strandat 5067.949 kb on - strandat 5068.008 kb on + strandat 5068.009 kb on - strandat 5068.009 kb on - strandat 5068.009 kb on - strandat 5068.075 kb on + strandat 5068.094 kb on + strandat 5068.094 kb on + strandat 5068.094 kb on + strandat 5068.095 kb on - strandat 5068.106 kb on + strandat 5068.107 kb on - strandat 5068.107 kb on - strandat 5068.153 kb on + strandat 5068.194 kb on + strandat 5068.194 kb on + strandat 5068.371 kb on - strand, within AO353_23090at 5068.371 kb on - strand, within AO353_23090at 5068.371 kb on - strand, within AO353_23090at 5068.426 kb on - strand, within AO353_23090at 5068.431 kb on + strand, within AO353_23090at 5068.431 kb on + strand, within AO353_23090at 5068.431 kb on + strand, within AO353_23090at 5068.432 kb on - strand, within AO353_23090at 5068.432 kb on - strand, within AO353_23090at 5068.432 kb on - strand, within AO353_23090at 5068.494 kb on + strand, within AO353_23090at 5068.495 kb on - strand, within AO353_23090at 5068.495 kb on - strand, within AO353_23090at 5068.737 kb on - strand, within AO353_23090at 5068.809 kb on + strand, within AO353_23090at 5068.809 kb on + strand, within AO353_23090at 5068.810 kb on - strand, within AO353_23090at 5068.810 kb on - strand, within AO353_23090at 5068.810 kb on - strand, within AO353_23090at 5068.810 kb on - strand, within AO353_23090at 5068.810 kb on - strand, within AO353_23090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
remove
5,066,295 + AO353_23080 0.36 +0.2
5,066,296 - AO353_23080 0.36 -0.7
5,066,359 - AO353_23080 0.41 +2.2
5,066,472 + AO353_23080 0.49 +0.9
5,066,472 + AO353_23080 0.49 +0.7
5,066,690 + AO353_23080 0.66 -0.6
5,066,690 + AO353_23080 0.66 -0.0
5,066,690 + AO353_23080 0.66 -0.3
5,066,690 + AO353_23080 0.66 -0.4
5,066,691 - AO353_23080 0.66 -2.0
5,066,691 - AO353_23080 0.66 +0.6
5,066,691 - AO353_23080 0.66 +0.2
5,066,691 - AO353_23080 0.66 -0.1
5,066,855 + AO353_23080 0.78 +0.4
5,066,855 + AO353_23080 0.78 -0.9
5,066,865 + AO353_23080 0.79 -0.4
5,066,865 + AO353_23080 0.79 -0.3
5,066,866 - AO353_23080 0.79 -0.8
5,066,876 - AO353_23080 0.80 -0.7
5,066,918 + AO353_23080 0.83 +1.0
5,066,953 + AO353_23080 0.85 -0.9
5,066,953 + AO353_23080 0.85 -0.5
5,066,953 + AO353_23080 0.85 +0.9
5,066,953 + AO353_23080 0.85 -0.2
5,066,953 + AO353_23080 0.85 -0.4
5,066,953 + AO353_23080 0.85 -2.6
5,066,953 + AO353_23080 0.85 -0.1
5,066,954 - AO353_23080 0.85 -1.4
5,066,954 - AO353_23080 0.85 +0.7
5,066,954 - AO353_23080 0.85 +0.9
5,066,954 - AO353_23080 0.85 +1.4
5,066,954 - AO353_23080 0.85 -0.4
5,066,954 - AO353_23080 0.85 -0.4
5,066,954 - AO353_23080 0.85 -1.5
5,066,954 - AO353_23080 0.85 -0.2
5,066,954 - AO353_23080 0.85 +0.3
5,066,954 - AO353_23080 0.85 +0.2
5,066,954 - AO353_23080 0.85 -0.6
5,066,954 - AO353_23080 0.85 -1.0
5,066,954 - AO353_23080 0.85 +0.1
5,066,954 - AO353_23080 0.85 +0.6
5,067,003 + +0.9
5,067,119 + +0.5
5,067,119 + +0.8
5,067,119 + +1.8
5,067,120 - -0.9
5,067,120 - -1.1
5,067,120 - +0.4
5,067,120 - -0.1
5,067,130 + -0.6
5,067,131 - +0.3
5,067,131 - -0.2
5,067,131 - -0.1
5,067,131 - +0.1
5,067,133 - -0.2
5,067,157 - -1.5
5,067,164 - +1.6
5,067,164 - -0.6
5,067,169 - +0.2
5,067,182 + -1.3
5,067,186 + -0.0
5,067,195 + -0.1
5,067,208 + -1.0
5,067,208 + -0.8
5,067,208 + -0.4
5,067,209 - +0.5
5,067,209 - -0.8
5,067,209 - +0.2
5,067,209 - -0.1
5,067,291 + -2.1
5,067,291 + -0.5
5,067,291 + -0.3
5,067,292 - +0.2
5,067,292 - -1.5
5,067,329 + AO353_23085 0.11 -0.8
5,067,329 + +2.2
5,067,329 + AO353_23085 0.11 -2.1
5,067,329 + AO353_23085 0.11 -0.7
5,067,329 + AO353_23085 0.11 -1.1
5,067,330 - AO353_23085 0.11 -2.3
5,067,330 - AO353_23085 0.11 +0.1
5,067,330 - AO353_23085 0.11 +0.3
5,067,330 - AO353_23085 0.11 -1.7
5,067,506 + AO353_23085 0.40 +0.2
5,067,507 - AO353_23085 0.40 -0.4
5,067,601 + AO353_23085 0.55 -0.3
5,067,786 + AO353_23085 0.85 -0.6
5,067,816 + +0.7
5,067,816 + -1.6
5,067,816 + +0.3
5,067,816 + -1.3
5,067,816 + +1.2
5,067,816 + -1.5
5,067,816 + -0.8
5,067,817 - +0.2
5,067,817 - +0.6
5,067,817 - -0.3
5,067,849 + +0.6
5,067,849 + -1.4
5,067,849 + -1.2
5,067,850 - -0.7
5,067,904 + +0.6
5,067,904 + +1.2
5,067,904 + -0.1
5,067,905 - -0.5
5,067,918 + +0.5
5,067,918 + -0.5
5,067,919 - -0.7
5,067,919 - -0.1
5,067,919 - +0.5
5,067,919 - -1.8
5,067,949 - +0.1
5,067,949 - +0.6
5,067,949 - -2.3
5,067,949 - -1.1
5,068,008 + +1.0
5,068,009 - +0.5
5,068,009 - -1.3
5,068,009 - +0.2
5,068,075 + +0.2
5,068,094 + -2.3
5,068,094 + +0.4
5,068,094 + +0.0
5,068,095 - -0.1
5,068,106 + +0.1
5,068,107 - +0.0
5,068,107 - +1.2
5,068,153 + -1.5
5,068,194 + +0.7
5,068,194 + -0.1
5,068,371 - AO353_23090 0.29 -0.6
5,068,371 - AO353_23090 0.29 -1.6
5,068,371 - AO353_23090 0.29 -2.8
5,068,426 - AO353_23090 0.35 -0.2
5,068,431 + AO353_23090 0.36 -2.0
5,068,431 + AO353_23090 0.36 -0.0
5,068,431 + AO353_23090 0.36 +0.6
5,068,432 - AO353_23090 0.36 +0.4
5,068,432 - AO353_23090 0.36 -0.8
5,068,432 - AO353_23090 0.36 +0.1
5,068,494 + AO353_23090 0.43 +0.1
5,068,495 - AO353_23090 0.43 +0.1
5,068,495 - AO353_23090 0.43 -0.7
5,068,737 - AO353_23090 0.70 -2.0
5,068,809 + AO353_23090 0.78 -0.8
5,068,809 + AO353_23090 0.78 -1.0
5,068,810 - AO353_23090 0.78 -0.8
5,068,810 - AO353_23090 0.78 -0.8
5,068,810 - AO353_23090 0.78 +0.2
5,068,810 - AO353_23090 0.78 +0.6
5,068,810 - AO353_23090 0.78 +0.2

Or see this region's nucleotide sequence