Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21030

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21015 and AO353_21020 overlap by 4 nucleotidesAO353_21020 and AO353_21025 overlap by 4 nucleotidesAO353_21025 and AO353_21030 overlap by 4 nucleotidesAO353_21030 and AO353_21035 are separated by 263 nucleotides AO353_21015: AO353_21015 - multidrug DMT transporter permease, at 4,593,099 to 4,594,430 _21015 AO353_21020: AO353_21020 - disulfide bond formation protein DsbA, at 4,594,427 to 4,595,092 _21020 AO353_21025: AO353_21025 - (2Fe-2S)-binding protein, at 4,595,089 to 4,595,415 _21025 AO353_21030: AO353_21030 - hypothetical protein, at 4,595,412 to 4,596,422 _21030 AO353_21035: AO353_21035 - AraC family transcriptional regulator, at 4,596,686 to 4,597,738 _21035 Position (kb) 4595 4596 4597Strain fitness (log2 ratio) -2 -1 0 1 2at 4594.465 kb on + strandat 4594.466 kb on - strandat 4594.594 kb on - strand, within AO353_21020at 4594.594 kb on - strand, within AO353_21020at 4594.619 kb on + strand, within AO353_21020at 4594.620 kb on - strand, within AO353_21020at 4594.620 kb on - strand, within AO353_21020at 4594.620 kb on - strand, within AO353_21020at 4594.735 kb on + strand, within AO353_21020at 4594.735 kb on + strand, within AO353_21020at 4594.736 kb on - strand, within AO353_21020at 4594.826 kb on + strand, within AO353_21020at 4594.826 kb on + strand, within AO353_21020at 4594.827 kb on - strand, within AO353_21020at 4594.827 kb on - strand, within AO353_21020at 4594.827 kb on - strand, within AO353_21020at 4594.835 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.941 kb on - strand, within AO353_21020at 4594.941 kb on - strand, within AO353_21020at 4595.031 kb on + strandat 4595.031 kb on + strandat 4595.031 kb on + strandat 4595.031 kb on + strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.108 kb on + strandat 4595.109 kb on - strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.436 kb on - strandat 4595.436 kb on - strandat 4595.441 kb on + strandat 4595.442 kb on - strandat 4595.520 kb on + strand, within AO353_21030at 4595.521 kb on - strand, within AO353_21030at 4595.651 kb on - strand, within AO353_21030at 4595.897 kb on - strand, within AO353_21030at 4595.919 kb on - strand, within AO353_21030at 4596.019 kb on + strand, within AO353_21030at 4596.019 kb on + strand, within AO353_21030at 4596.019 kb on + strand, within AO353_21030at 4596.061 kb on + strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.212 kb on + strand, within AO353_21030at 4596.421 kb on - strandat 4596.421 kb on - strandat 4596.454 kb on + strandat 4596.855 kb on + strand, within AO353_21035at 4596.855 kb on + strand, within AO353_21035at 4596.856 kb on - strand, within AO353_21035at 4596.856 kb on - strand, within AO353_21035at 4596.873 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.023 kb on + strand, within AO353_21035at 4597.024 kb on - strand, within AO353_21035at 4597.024 kb on - strand, within AO353_21035at 4597.024 kb on - strand, within AO353_21035at 4597.033 kb on + strand, within AO353_21035at 4597.086 kb on + strand, within AO353_21035at 4597.087 kb on - strand, within AO353_21035at 4597.087 kb on - strand, within AO353_21035at 4597.087 kb on - strand, within AO353_21035at 4597.087 kb on - strand, within AO353_21035at 4597.098 kb on + strand, within AO353_21035at 4597.099 kb on - strand, within AO353_21035at 4597.257 kb on + strand, within AO353_21035at 4597.257 kb on + strand, within AO353_21035at 4597.258 kb on - strand, within AO353_21035at 4597.258 kb on - strand, within AO353_21035

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,594,465 + -0.4
4,594,466 - +2.1
4,594,594 - AO353_21020 0.25 -0.3
4,594,594 - AO353_21020 0.25 +0.8
4,594,619 + AO353_21020 0.29 +1.0
4,594,620 - AO353_21020 0.29 +0.1
4,594,620 - AO353_21020 0.29 -0.9
4,594,620 - AO353_21020 0.29 -1.9
4,594,735 + AO353_21020 0.46 +0.4
4,594,735 + AO353_21020 0.46 -1.4
4,594,736 - AO353_21020 0.46 +0.4
4,594,826 + AO353_21020 0.60 -0.7
4,594,826 + AO353_21020 0.60 +1.0
4,594,827 - AO353_21020 0.60 +0.2
4,594,827 - AO353_21020 0.60 -0.7
4,594,827 - AO353_21020 0.60 +0.2
4,594,835 + AO353_21020 0.61 +0.4
4,594,940 + AO353_21020 0.77 +0.9
4,594,940 + AO353_21020 0.77 +0.1
4,594,940 + AO353_21020 0.77 -1.6
4,594,940 + AO353_21020 0.77 -0.2
4,594,941 - AO353_21020 0.77 -0.6
4,594,941 - AO353_21020 0.77 +0.2
4,595,031 + -0.9
4,595,031 + +0.1
4,595,031 + +1.8
4,595,031 + -0.2
4,595,032 - -0.6
4,595,032 - +0.2
4,595,032 - +0.6
4,595,032 - -0.0
4,595,032 - -1.5
4,595,032 - -0.8
4,595,032 - +0.3
4,595,032 - -1.4
4,595,108 + -1.1
4,595,109 - -0.4
4,595,435 + +0.9
4,595,435 + +1.4
4,595,435 + +0.4
4,595,435 + +0.1
4,595,435 + -0.5
4,595,436 - +0.5
4,595,436 - -1.6
4,595,441 + +0.1
4,595,442 - -0.9
4,595,520 + AO353_21030 0.11 -0.7
4,595,521 - AO353_21030 0.11 -0.1
4,595,651 - AO353_21030 0.24 -0.4
4,595,897 - AO353_21030 0.48 -2.2
4,595,919 - AO353_21030 0.50 -0.8
4,596,019 + AO353_21030 0.60 -0.9
4,596,019 + AO353_21030 0.60 +1.4
4,596,019 + AO353_21030 0.60 -1.9
4,596,061 + AO353_21030 0.64 +0.2
4,596,062 - AO353_21030 0.64 -1.2
4,596,062 - AO353_21030 0.64 -1.3
4,596,062 - AO353_21030 0.64 +0.1
4,596,062 - AO353_21030 0.64 +1.7
4,596,062 - AO353_21030 0.64 -0.4
4,596,062 - AO353_21030 0.64 -0.5
4,596,212 + AO353_21030 0.79 -0.8
4,596,421 - -1.0
4,596,421 - -0.6
4,596,454 + +0.1
4,596,855 + AO353_21035 0.16 -0.9
4,596,855 + AO353_21035 0.16 +0.6
4,596,856 - AO353_21035 0.16 -0.4
4,596,856 - AO353_21035 0.16 -0.6
4,596,873 + AO353_21035 0.18 -1.1
4,597,023 + AO353_21035 0.32 +0.3
4,597,023 + AO353_21035 0.32 -0.8
4,597,023 + AO353_21035 0.32 +1.2
4,597,023 + AO353_21035 0.32 -1.0
4,597,023 + AO353_21035 0.32 -0.2
4,597,023 + AO353_21035 0.32 +0.9
4,597,023 + AO353_21035 0.32 +0.1
4,597,024 - AO353_21035 0.32 -0.2
4,597,024 - AO353_21035 0.32 -1.0
4,597,024 - AO353_21035 0.32 -0.1
4,597,033 + AO353_21035 0.33 +1.1
4,597,086 + AO353_21035 0.38 +0.0
4,597,087 - AO353_21035 0.38 -1.4
4,597,087 - AO353_21035 0.38 +0.6
4,597,087 - AO353_21035 0.38 -0.9
4,597,087 - AO353_21035 0.38 -0.6
4,597,098 + AO353_21035 0.39 +2.0
4,597,099 - AO353_21035 0.39 +0.3
4,597,257 + AO353_21035 0.54 -0.1
4,597,257 + AO353_21035 0.54 -0.2
4,597,258 - AO353_21035 0.54 -0.2
4,597,258 - AO353_21035 0.54 -0.6

Or see this region's nucleotide sequence