Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19185 and AO353_19190 are separated by 8 nucleotides AO353_19190 and AO353_19195 are separated by 297 nucleotides AO353_19195 and AO353_19200 are separated by 268 nucleotides
AO353_19185: AO353_19185 - histidine kinase, at 4,207,304 to 4,210,933
_19185
AO353_19190: AO353_19190 - LuxR family transcriptional regulator, at 4,210,942 to 4,211,568
_19190
AO353_19195: AO353_19195 - response regulator, at 4,211,866 to 4,212,264
_19195
AO353_19200: AO353_19200 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,212,533 to 4,213,864
_19200
Position (kb)
4211
4212
4213 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4210.886 kb on + strand at 4210.886 kb on + strand at 4210.886 kb on + strand at 4210.887 kb on - strand at 4210.887 kb on - strand at 4210.887 kb on - strand at 4210.887 kb on - strand at 4210.887 kb on - strand at 4210.887 kb on - strand at 4210.903 kb on - strand at 4210.903 kb on - strand at 4210.903 kb on - strand at 4210.903 kb on - strand at 4210.903 kb on - strand at 4210.903 kb on - strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.907 kb on + strand at 4210.908 kb on - strand at 4210.908 kb on - strand at 4210.908 kb on - strand at 4210.908 kb on - strand at 4210.908 kb on - strand at 4210.908 kb on - strand at 4210.911 kb on + strand at 4210.911 kb on + strand at 4210.911 kb on + strand at 4210.911 kb on + strand at 4210.911 kb on + strand at 4210.911 kb on + strand at 4210.911 kb on + strand at 4210.912 kb on - strand at 4210.912 kb on - strand at 4210.912 kb on - strand at 4210.912 kb on - strand at 4210.919 kb on + strand at 4210.919 kb on + strand at 4210.920 kb on - strand at 4210.957 kb on - strand at 4210.974 kb on + strand at 4210.974 kb on + strand at 4210.974 kb on + strand at 4210.982 kb on - strand at 4210.982 kb on - strand at 4210.982 kb on - strand at 4211.024 kb on + strand, within AO353_19190 at 4211.025 kb on - strand, within AO353_19190 at 4211.080 kb on - strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.201 kb on + strand, within AO353_19190 at 4211.202 kb on - strand, within AO353_19190 at 4211.202 kb on - strand, within AO353_19190 at 4211.202 kb on - strand, within AO353_19190 at 4211.202 kb on - strand, within AO353_19190 at 4211.202 kb on - strand, within AO353_19190 at 4211.202 kb on - strand, within AO353_19190 at 4211.208 kb on - strand, within AO353_19190 at 4211.208 kb on - strand, within AO353_19190 at 4211.208 kb on - strand, within AO353_19190 at 4211.271 kb on - strand, within AO353_19190 at 4211.485 kb on + strand, within AO353_19190 at 4211.492 kb on + strand, within AO353_19190 at 4211.493 kb on - strand, within AO353_19190 at 4211.493 kb on - strand, within AO353_19190 at 4211.514 kb on + strand at 4211.514 kb on + strand at 4211.515 kb on - strand at 4211.515 kb on - strand at 4211.515 kb on - strand at 4211.515 kb on - strand at 4211.515 kb on - strand at 4211.568 kb on + strand at 4211.582 kb on - strand at 4211.607 kb on + strand at 4211.658 kb on - strand at 4211.659 kb on + strand at 4211.693 kb on + strand at 4211.727 kb on - strand at 4211.729 kb on - strand at 4211.744 kb on - strand at 4211.781 kb on + strand at 4211.781 kb on + strand at 4211.874 kb on - strand at 4211.933 kb on + strand, within AO353_19195 at 4211.941 kb on + strand, within AO353_19195 at 4212.025 kb on + strand, within AO353_19195 at 4212.025 kb on + strand, within AO353_19195 at 4212.026 kb on - strand, within AO353_19195 at 4212.100 kb on + strand, within AO353_19195 at 4212.100 kb on + strand, within AO353_19195 at 4212.100 kb on + strand, within AO353_19195 at 4212.100 kb on + strand, within AO353_19195 at 4212.174 kb on + strand, within AO353_19195 at 4212.255 kb on - strand at 4212.264 kb on + strand at 4212.264 kb on + strand at 4212.265 kb on - strand at 4212.266 kb on + strand at 4212.266 kb on + strand at 4212.266 kb on + strand at 4212.267 kb on - strand at 4212.267 kb on - strand at 4212.330 kb on + strand at 4212.358 kb on - strand at 4212.404 kb on + strand at 4212.405 kb on - strand at 4212.415 kb on + strand at 4212.415 kb on + strand at 4212.416 kb on - strand at 4212.445 kb on - strand at 4212.446 kb on + strand at 4212.454 kb on - strand at 4212.473 kb on + strand at 4212.473 kb on + strand at 4212.474 kb on - strand at 4212.474 kb on - strand at 4212.582 kb on + strand at 4212.582 kb on + strand at 4212.582 kb on + strand at 4212.582 kb on + strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.583 kb on - strand at 4212.631 kb on + strand at 4212.631 kb on + strand at 4212.632 kb on - strand at 4212.661 kb on + strand at 4212.661 kb on + strand at 4212.661 kb on + strand at 4212.662 kb on - strand at 4212.662 kb on - strand at 4212.662 kb on - strand at 4212.680 kb on + strand, within AO353_19200 at 4212.681 kb on - strand, within AO353_19200 at 4212.681 kb on - strand, within AO353_19200 at 4212.681 kb on - strand, within AO353_19200 at 4212.771 kb on + strand, within AO353_19200 at 4212.771 kb on + strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.772 kb on - strand, within AO353_19200 at 4212.845 kb on + strand, within AO353_19200 at 4212.908 kb on + strand, within AO353_19200 at 4212.909 kb on - strand, within AO353_19200 at 4212.971 kb on - strand, within AO353_19200 at 4213.019 kb on + strand, within AO353_19200 at 4213.026 kb on + strand, within AO353_19200 at 4213.161 kb on + strand, within AO353_19200 at 4213.161 kb on + strand, within AO353_19200 at 4213.161 kb on + strand, within AO353_19200 at 4213.162 kb on - strand, within AO353_19200 at 4213.162 kb on - strand, within AO353_19200
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 4,210,886 + -0.9 4,210,886 + -1.4 4,210,886 + -2.8 4,210,887 - -1.0 4,210,887 - +0.6 4,210,887 - -0.7 4,210,887 - +0.5 4,210,887 - +1.2 4,210,887 - -1.6 4,210,903 - +1.4 4,210,903 - -0.0 4,210,903 - -1.3 4,210,903 - -1.2 4,210,903 - +1.1 4,210,903 - -2.0 4,210,907 + +0.7 4,210,907 + +0.2 4,210,907 + +0.9 4,210,907 + +1.0 4,210,907 + -0.3 4,210,907 + -1.0 4,210,907 + -1.3 4,210,907 + +0.5 4,210,907 + +0.3 4,210,907 + +0.3 4,210,907 + -1.7 4,210,907 + +1.1 4,210,907 + +0.4 4,210,907 + +0.3 4,210,907 + +0.1 4,210,907 + -0.1 4,210,907 + -0.5 4,210,908 - +0.1 4,210,908 - +0.3 4,210,908 - -1.0 4,210,908 - -0.0 4,210,908 - +0.8 4,210,908 - +0.7 4,210,911 + -0.2 4,210,911 + -0.0 4,210,911 + -1.8 4,210,911 + -1.0 4,210,911 + +0.5 4,210,911 + -0.3 4,210,911 + -2.5 4,210,912 - -0.5 4,210,912 - -1.0 4,210,912 - +1.3 4,210,912 - +0.0 4,210,919 + -0.8 4,210,919 + -1.0 4,210,920 - +0.5 4,210,957 - -0.6 4,210,974 + +0.8 4,210,974 + +0.5 4,210,974 + +0.1 4,210,982 - -1.0 4,210,982 - +0.1 4,210,982 - +0.0 4,211,024 + AO353_19190 0.13 +2.0 4,211,025 - AO353_19190 0.13 -1.0 4,211,080 - AO353_19190 0.22 -0.5 4,211,201 + AO353_19190 0.41 -1.8 4,211,201 + AO353_19190 0.41 +1.1 4,211,201 + AO353_19190 0.41 +1.9 4,211,201 + AO353_19190 0.41 +0.2 4,211,201 + AO353_19190 0.41 -0.5 4,211,201 + AO353_19190 0.41 +0.0 4,211,201 + AO353_19190 0.41 +1.1 4,211,201 + AO353_19190 0.41 +0.5 4,211,201 + AO353_19190 0.41 -0.5 4,211,201 + AO353_19190 0.41 -1.9 4,211,202 - AO353_19190 0.41 -2.5 4,211,202 - AO353_19190 0.41 -0.0 4,211,202 - AO353_19190 0.41 -0.0 4,211,202 - AO353_19190 0.41 -0.1 4,211,202 - AO353_19190 0.41 -0.4 4,211,202 - AO353_19190 0.41 -0.1 4,211,208 - AO353_19190 0.42 +0.5 4,211,208 - AO353_19190 0.42 -1.3 4,211,208 - AO353_19190 0.42 -0.5 4,211,271 - AO353_19190 0.52 -0.2 4,211,485 + AO353_19190 0.87 -0.6 4,211,492 + AO353_19190 0.88 +0.7 4,211,493 - AO353_19190 0.88 +0.3 4,211,493 - AO353_19190 0.88 -0.2 4,211,514 + +0.8 4,211,514 + +0.4 4,211,515 - -0.7 4,211,515 - +0.7 4,211,515 - +0.7 4,211,515 - -2.9 4,211,515 - +0.5 4,211,568 + +1.0 4,211,582 - -0.7 4,211,607 + -0.1 4,211,658 - +1.1 4,211,659 + -2.4 4,211,693 + +1.5 4,211,727 - -0.7 4,211,729 - -1.5 4,211,744 - +0.4 4,211,781 + +0.5 4,211,781 + -1.8 4,211,874 - +1.2 4,211,933 + AO353_19195 0.17 -0.1 4,211,941 + AO353_19195 0.19 -0.3 4,212,025 + AO353_19195 0.40 -1.9 4,212,025 + AO353_19195 0.40 +0.5 4,212,026 - AO353_19195 0.40 -0.4 4,212,100 + AO353_19195 0.59 -0.3 4,212,100 + AO353_19195 0.59 -1.0 4,212,100 + AO353_19195 0.59 -2.5 4,212,100 + AO353_19195 0.59 -1.0 4,212,174 + AO353_19195 0.77 -1.9 4,212,255 - -0.8 4,212,264 + +0.4 4,212,264 + -0.0 4,212,265 - -1.9 4,212,266 + -0.2 4,212,266 + +0.5 4,212,266 + -1.5 4,212,267 - -0.1 4,212,267 - +0.7 4,212,330 + +0.1 4,212,358 - +2.0 4,212,404 + +0.4 4,212,405 - -0.3 4,212,415 + -0.5 4,212,415 + -0.6 4,212,416 - -0.9 4,212,445 - +0.7 4,212,446 + -0.9 4,212,454 - -0.5 4,212,473 + -0.4 4,212,473 + -0.0 4,212,474 - +1.5 4,212,474 - +1.0 4,212,582 + -0.8 4,212,582 + -0.5 4,212,582 + -0.6 4,212,582 + +0.7 4,212,583 - -0.2 4,212,583 - -0.0 4,212,583 - -1.5 4,212,583 - -1.3 4,212,583 - +0.3 4,212,583 - -0.0 4,212,583 - +0.4 4,212,583 - -1.0 4,212,583 - +0.1 4,212,631 + -0.2 4,212,631 + +0.5 4,212,632 - -0.5 4,212,661 + -1.2 4,212,661 + -1.0 4,212,661 + -0.9 4,212,662 - +0.7 4,212,662 - +0.4 4,212,662 - +1.4 4,212,680 + AO353_19200 0.11 -1.7 4,212,681 - AO353_19200 0.11 -0.3 4,212,681 - AO353_19200 0.11 -0.2 4,212,681 - AO353_19200 0.11 -0.2 4,212,771 + AO353_19200 0.18 -0.6 4,212,771 + AO353_19200 0.18 -0.2 4,212,772 - AO353_19200 0.18 +0.1 4,212,772 - AO353_19200 0.18 +0.9 4,212,772 - AO353_19200 0.18 +1.3 4,212,772 - AO353_19200 0.18 +1.1 4,212,772 - AO353_19200 0.18 +0.9 4,212,772 - AO353_19200 0.18 -0.6 4,212,772 - AO353_19200 0.18 -0.5 4,212,845 + AO353_19200 0.23 +0.5 4,212,908 + AO353_19200 0.28 -0.5 4,212,909 - AO353_19200 0.28 +1.1 4,212,971 - AO353_19200 0.33 -1.0 4,213,019 + AO353_19200 0.36 -0.4 4,213,026 + AO353_19200 0.37 -1.6 4,213,161 + AO353_19200 0.47 +0.2 4,213,161 + AO353_19200 0.47 +1.2 4,213,161 + AO353_19200 0.47 +1.5 4,213,162 - AO353_19200 0.47 +1.0 4,213,162 - AO353_19200 0.47 -0.8
Or see this region's nucleotide sequence