Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19195

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19185 and AO353_19190 are separated by 8 nucleotidesAO353_19190 and AO353_19195 are separated by 297 nucleotidesAO353_19195 and AO353_19200 are separated by 268 nucleotides AO353_19185: AO353_19185 - histidine kinase, at 4,207,304 to 4,210,933 _19185 AO353_19190: AO353_19190 - LuxR family transcriptional regulator, at 4,210,942 to 4,211,568 _19190 AO353_19195: AO353_19195 - response regulator, at 4,211,866 to 4,212,264 _19195 AO353_19200: AO353_19200 - deoxyguanosinetriphosphate triphosphohydrolase, at 4,212,533 to 4,213,864 _19200 Position (kb) 4211 4212 4213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4210.886 kb on + strandat 4210.886 kb on + strandat 4210.886 kb on + strandat 4210.887 kb on - strandat 4210.887 kb on - strandat 4210.887 kb on - strandat 4210.887 kb on - strandat 4210.887 kb on - strandat 4210.887 kb on - strandat 4210.903 kb on - strandat 4210.903 kb on - strandat 4210.903 kb on - strandat 4210.903 kb on - strandat 4210.903 kb on - strandat 4210.903 kb on - strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.907 kb on + strandat 4210.908 kb on - strandat 4210.908 kb on - strandat 4210.908 kb on - strandat 4210.908 kb on - strandat 4210.908 kb on - strandat 4210.908 kb on - strandat 4210.911 kb on + strandat 4210.911 kb on + strandat 4210.911 kb on + strandat 4210.911 kb on + strandat 4210.911 kb on + strandat 4210.911 kb on + strandat 4210.911 kb on + strandat 4210.912 kb on - strandat 4210.912 kb on - strandat 4210.912 kb on - strandat 4210.912 kb on - strandat 4210.919 kb on + strandat 4210.919 kb on + strandat 4210.920 kb on - strandat 4210.957 kb on - strandat 4210.974 kb on + strandat 4210.974 kb on + strandat 4210.974 kb on + strandat 4210.982 kb on - strandat 4210.982 kb on - strandat 4210.982 kb on - strandat 4211.024 kb on + strand, within AO353_19190at 4211.025 kb on - strand, within AO353_19190at 4211.080 kb on - strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.201 kb on + strand, within AO353_19190at 4211.202 kb on - strand, within AO353_19190at 4211.202 kb on - strand, within AO353_19190at 4211.202 kb on - strand, within AO353_19190at 4211.202 kb on - strand, within AO353_19190at 4211.202 kb on - strand, within AO353_19190at 4211.202 kb on - strand, within AO353_19190at 4211.208 kb on - strand, within AO353_19190at 4211.208 kb on - strand, within AO353_19190at 4211.208 kb on - strand, within AO353_19190at 4211.271 kb on - strand, within AO353_19190at 4211.485 kb on + strand, within AO353_19190at 4211.492 kb on + strand, within AO353_19190at 4211.493 kb on - strand, within AO353_19190at 4211.493 kb on - strand, within AO353_19190at 4211.514 kb on + strandat 4211.514 kb on + strandat 4211.515 kb on - strandat 4211.515 kb on - strandat 4211.515 kb on - strandat 4211.515 kb on - strandat 4211.515 kb on - strandat 4211.568 kb on + strandat 4211.582 kb on - strandat 4211.607 kb on + strandat 4211.658 kb on - strandat 4211.659 kb on + strandat 4211.693 kb on + strandat 4211.727 kb on - strandat 4211.729 kb on - strandat 4211.744 kb on - strandat 4211.781 kb on + strandat 4211.781 kb on + strandat 4211.874 kb on - strandat 4211.933 kb on + strand, within AO353_19195at 4211.941 kb on + strand, within AO353_19195at 4212.025 kb on + strand, within AO353_19195at 4212.025 kb on + strand, within AO353_19195at 4212.026 kb on - strand, within AO353_19195at 4212.100 kb on + strand, within AO353_19195at 4212.100 kb on + strand, within AO353_19195at 4212.100 kb on + strand, within AO353_19195at 4212.100 kb on + strand, within AO353_19195at 4212.174 kb on + strand, within AO353_19195at 4212.255 kb on - strandat 4212.264 kb on + strandat 4212.264 kb on + strandat 4212.265 kb on - strandat 4212.266 kb on + strandat 4212.266 kb on + strandat 4212.266 kb on + strandat 4212.267 kb on - strandat 4212.267 kb on - strandat 4212.330 kb on + strandat 4212.358 kb on - strandat 4212.404 kb on + strandat 4212.405 kb on - strandat 4212.415 kb on + strandat 4212.415 kb on + strandat 4212.416 kb on - strandat 4212.445 kb on - strandat 4212.446 kb on + strandat 4212.454 kb on - strandat 4212.473 kb on + strandat 4212.473 kb on + strandat 4212.474 kb on - strandat 4212.474 kb on - strandat 4212.582 kb on + strandat 4212.582 kb on + strandat 4212.582 kb on + strandat 4212.582 kb on + strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.583 kb on - strandat 4212.631 kb on + strandat 4212.631 kb on + strandat 4212.632 kb on - strandat 4212.661 kb on + strandat 4212.661 kb on + strandat 4212.661 kb on + strandat 4212.662 kb on - strandat 4212.662 kb on - strandat 4212.662 kb on - strandat 4212.680 kb on + strand, within AO353_19200at 4212.681 kb on - strand, within AO353_19200at 4212.681 kb on - strand, within AO353_19200at 4212.681 kb on - strand, within AO353_19200at 4212.771 kb on + strand, within AO353_19200at 4212.771 kb on + strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.772 kb on - strand, within AO353_19200at 4212.845 kb on + strand, within AO353_19200at 4212.908 kb on + strand, within AO353_19200at 4212.909 kb on - strand, within AO353_19200at 4212.971 kb on - strand, within AO353_19200at 4213.019 kb on + strand, within AO353_19200at 4213.026 kb on + strand, within AO353_19200at 4213.161 kb on + strand, within AO353_19200at 4213.161 kb on + strand, within AO353_19200at 4213.161 kb on + strand, within AO353_19200at 4213.162 kb on - strand, within AO353_19200at 4213.162 kb on - strand, within AO353_19200

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,210,886 + -0.9
4,210,886 + -1.4
4,210,886 + -2.8
4,210,887 - -1.0
4,210,887 - +0.6
4,210,887 - -0.7
4,210,887 - +0.5
4,210,887 - +1.2
4,210,887 - -1.6
4,210,903 - +1.4
4,210,903 - -0.0
4,210,903 - -1.3
4,210,903 - -1.2
4,210,903 - +1.1
4,210,903 - -2.0
4,210,907 + +0.7
4,210,907 + +0.2
4,210,907 + +0.9
4,210,907 + +1.0
4,210,907 + -0.3
4,210,907 + -1.0
4,210,907 + -1.3
4,210,907 + +0.5
4,210,907 + +0.3
4,210,907 + +0.3
4,210,907 + -1.7
4,210,907 + +1.1
4,210,907 + +0.4
4,210,907 + +0.3
4,210,907 + +0.1
4,210,907 + -0.1
4,210,907 + -0.5
4,210,908 - +0.1
4,210,908 - +0.3
4,210,908 - -1.0
4,210,908 - -0.0
4,210,908 - +0.8
4,210,908 - +0.7
4,210,911 + -0.2
4,210,911 + -0.0
4,210,911 + -1.8
4,210,911 + -1.0
4,210,911 + +0.5
4,210,911 + -0.3
4,210,911 + -2.5
4,210,912 - -0.5
4,210,912 - -1.0
4,210,912 - +1.3
4,210,912 - +0.0
4,210,919 + -0.8
4,210,919 + -1.0
4,210,920 - +0.5
4,210,957 - -0.6
4,210,974 + +0.8
4,210,974 + +0.5
4,210,974 + +0.1
4,210,982 - -1.0
4,210,982 - +0.1
4,210,982 - +0.0
4,211,024 + AO353_19190 0.13 +2.0
4,211,025 - AO353_19190 0.13 -1.0
4,211,080 - AO353_19190 0.22 -0.5
4,211,201 + AO353_19190 0.41 -1.8
4,211,201 + AO353_19190 0.41 +1.1
4,211,201 + AO353_19190 0.41 +1.9
4,211,201 + AO353_19190 0.41 +0.2
4,211,201 + AO353_19190 0.41 -0.5
4,211,201 + AO353_19190 0.41 +0.0
4,211,201 + AO353_19190 0.41 +1.1
4,211,201 + AO353_19190 0.41 +0.5
4,211,201 + AO353_19190 0.41 -0.5
4,211,201 + AO353_19190 0.41 -1.9
4,211,202 - AO353_19190 0.41 -2.5
4,211,202 - AO353_19190 0.41 -0.0
4,211,202 - AO353_19190 0.41 -0.0
4,211,202 - AO353_19190 0.41 -0.1
4,211,202 - AO353_19190 0.41 -0.4
4,211,202 - AO353_19190 0.41 -0.1
4,211,208 - AO353_19190 0.42 +0.5
4,211,208 - AO353_19190 0.42 -1.3
4,211,208 - AO353_19190 0.42 -0.5
4,211,271 - AO353_19190 0.52 -0.2
4,211,485 + AO353_19190 0.87 -0.6
4,211,492 + AO353_19190 0.88 +0.7
4,211,493 - AO353_19190 0.88 +0.3
4,211,493 - AO353_19190 0.88 -0.2
4,211,514 + +0.8
4,211,514 + +0.4
4,211,515 - -0.7
4,211,515 - +0.7
4,211,515 - +0.7
4,211,515 - -2.9
4,211,515 - +0.5
4,211,568 + +1.0
4,211,582 - -0.7
4,211,607 + -0.1
4,211,658 - +1.1
4,211,659 + -2.4
4,211,693 + +1.5
4,211,727 - -0.7
4,211,729 - -1.5
4,211,744 - +0.4
4,211,781 + +0.5
4,211,781 + -1.8
4,211,874 - +1.2
4,211,933 + AO353_19195 0.17 -0.1
4,211,941 + AO353_19195 0.19 -0.3
4,212,025 + AO353_19195 0.40 -1.9
4,212,025 + AO353_19195 0.40 +0.5
4,212,026 - AO353_19195 0.40 -0.4
4,212,100 + AO353_19195 0.59 -0.3
4,212,100 + AO353_19195 0.59 -1.0
4,212,100 + AO353_19195 0.59 -2.5
4,212,100 + AO353_19195 0.59 -1.0
4,212,174 + AO353_19195 0.77 -1.9
4,212,255 - -0.8
4,212,264 + +0.4
4,212,264 + -0.0
4,212,265 - -1.9
4,212,266 + -0.2
4,212,266 + +0.5
4,212,266 + -1.5
4,212,267 - -0.1
4,212,267 - +0.7
4,212,330 + +0.1
4,212,358 - +2.0
4,212,404 + +0.4
4,212,405 - -0.3
4,212,415 + -0.5
4,212,415 + -0.6
4,212,416 - -0.9
4,212,445 - +0.7
4,212,446 + -0.9
4,212,454 - -0.5
4,212,473 + -0.4
4,212,473 + -0.0
4,212,474 - +1.5
4,212,474 - +1.0
4,212,582 + -0.8
4,212,582 + -0.5
4,212,582 + -0.6
4,212,582 + +0.7
4,212,583 - -0.2
4,212,583 - -0.0
4,212,583 - -1.5
4,212,583 - -1.3
4,212,583 - +0.3
4,212,583 - -0.0
4,212,583 - +0.4
4,212,583 - -1.0
4,212,583 - +0.1
4,212,631 + -0.2
4,212,631 + +0.5
4,212,632 - -0.5
4,212,661 + -1.2
4,212,661 + -1.0
4,212,661 + -0.9
4,212,662 - +0.7
4,212,662 - +0.4
4,212,662 - +1.4
4,212,680 + AO353_19200 0.11 -1.7
4,212,681 - AO353_19200 0.11 -0.3
4,212,681 - AO353_19200 0.11 -0.2
4,212,681 - AO353_19200 0.11 -0.2
4,212,771 + AO353_19200 0.18 -0.6
4,212,771 + AO353_19200 0.18 -0.2
4,212,772 - AO353_19200 0.18 +0.1
4,212,772 - AO353_19200 0.18 +0.9
4,212,772 - AO353_19200 0.18 +1.3
4,212,772 - AO353_19200 0.18 +1.1
4,212,772 - AO353_19200 0.18 +0.9
4,212,772 - AO353_19200 0.18 -0.6
4,212,772 - AO353_19200 0.18 -0.5
4,212,845 + AO353_19200 0.23 +0.5
4,212,908 + AO353_19200 0.28 -0.5
4,212,909 - AO353_19200 0.28 +1.1
4,212,971 - AO353_19200 0.33 -1.0
4,213,019 + AO353_19200 0.36 -0.4
4,213,026 + AO353_19200 0.37 -1.6
4,213,161 + AO353_19200 0.47 +0.2
4,213,161 + AO353_19200 0.47 +1.2
4,213,161 + AO353_19200 0.47 +1.5
4,213,162 - AO353_19200 0.47 +1.0
4,213,162 - AO353_19200 0.47 -0.8

Or see this region's nucleotide sequence