Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18585

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18575 and AO353_18580 overlap by 1 nucleotidesAO353_18580 and AO353_18585 are separated by 80 nucleotidesAO353_18585 and AO353_18590 are separated by 281 nucleotides AO353_18575: AO353_18575 - tyrosine aminotransferase (EC 2.6.1.57) (from data), at 4,086,880 to 4,088,073 _18575 AO353_18580: AO353_18580 - pterin-4-alpha-carbinolamine dehydratase, at 4,088,073 to 4,088,429 _18580 AO353_18585: AO353_18585 - Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data), at 4,088,510 to 4,089,301 _18585 AO353_18590: AO353_18590 - AAA family ATPase, at 4,089,583 to 4,091,145 _18590 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4087.625 kb on + strand, within AO353_18575at 4087.626 kb on - strand, within AO353_18575at 4087.626 kb on - strand, within AO353_18575at 4087.626 kb on - strand, within AO353_18575at 4087.626 kb on - strand, within AO353_18575at 4087.626 kb on - strand, within AO353_18575at 4087.661 kb on + strand, within AO353_18575at 4087.661 kb on + strand, within AO353_18575at 4087.661 kb on + strand, within AO353_18575at 4087.662 kb on - strand, within AO353_18575at 4087.662 kb on - strand, within AO353_18575at 4087.662 kb on - strand, within AO353_18575at 4087.662 kb on - strand, within AO353_18575at 4087.662 kb on - strand, within AO353_18575at 4087.877 kb on + strand, within AO353_18575at 4087.877 kb on + strand, within AO353_18575at 4087.877 kb on + strand, within AO353_18575at 4087.877 kb on + strand, within AO353_18575at 4087.877 kb on + strand, within AO353_18575at 4087.964 kb on + strandat 4087.964 kb on + strandat 4087.965 kb on - strandat 4088.013 kb on - strandat 4088.074 kb on + strandat 4088.074 kb on + strandat 4088.075 kb on - strandat 4088.075 kb on - strandat 4088.075 kb on - strandat 4088.456 kb on + strandat 4088.467 kb on - strandat 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.637 kb on + strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strandat 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.638 kb on - strand, within AO353_18585at 4088.665 kb on - strand, within AO353_18585at 4088.727 kb on + strand, within AO353_18585at 4088.727 kb on + strand, within AO353_18585at 4088.727 kb on + strand, within AO353_18585at 4088.728 kb on - strand, within AO353_18585at 4088.728 kb on - strand, within AO353_18585at 4088.766 kb on + strand, within AO353_18585at 4088.767 kb on - strand, within AO353_18585at 4088.767 kb on - strand, within AO353_18585at 4088.820 kb on + strand, within AO353_18585at 4088.835 kb on + strand, within AO353_18585at 4088.836 kb on - strand, within AO353_18585at 4088.862 kb on - strand, within AO353_18585at 4088.877 kb on + strand, within AO353_18585at 4088.877 kb on + strand, within AO353_18585at 4088.878 kb on - strand, within AO353_18585at 4088.964 kb on + strand, within AO353_18585at 4088.964 kb on + strand, within AO353_18585at 4088.965 kb on - strand, within AO353_18585at 4088.989 kb on + strand, within AO353_18585at 4088.989 kb on + strand, within AO353_18585at 4088.990 kb on - strand, within AO353_18585at 4088.990 kb on - strand, within AO353_18585at 4089.023 kb on + strand, within AO353_18585at 4089.024 kb on - strand, within AO353_18585at 4089.165 kb on + strand, within AO353_18585at 4089.165 kb on + strandat 4089.165 kb on + strand, within AO353_18585at 4089.165 kb on + strand, within AO353_18585at 4089.165 kb on + strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.166 kb on - strand, within AO353_18585at 4089.247 kb on - strandat 4089.247 kb on - strandat 4089.247 kb on - strandat 4089.247 kb on - strandat 4089.247 kb on - strandat 4089.253 kb on + strandat 4089.254 kb on - strandat 4089.254 kb on - strandat 4089.254 kb on - strandat 4089.254 kb on - strandat 4089.254 kb on - strandat 4089.285 kb on + strandat 4089.285 kb on + strandat 4089.285 kb on + strandat 4089.285 kb on + strandat 4089.285 kb on + strandat 4089.286 kb on - strandat 4089.286 kb on - strandat 4089.286 kb on - strandat 4089.286 kb on - strandat 4089.286 kb on - strandat 4089.322 kb on + strandat 4089.322 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.333 kb on + strandat 4089.334 kb on - strandat 4089.334 kb on - strandat 4089.334 kb on - strandat 4089.334 kb on - strandat 4089.355 kb on - strandat 4089.355 kb on - strandat 4089.361 kb on - strandat 4089.460 kb on + strandat 4089.460 kb on + strandat 4089.460 kb on + strandat 4089.465 kb on - strandat 4089.465 kb on - strandat 4089.562 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.580 kb on + strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.581 kb on - strandat 4089.582 kb on + strandat 4089.582 kb on + strandat 4089.582 kb on + strandat 4089.582 kb on + strandat 4089.582 kb on + strandat 4089.582 kb on + strandat 4089.582 kb on + strandat 4089.583 kb on - strandat 4089.583 kb on - strandat 4089.583 kb on - strandat 4089.583 kb on - strandat 4089.588 kb on + strandat 4089.589 kb on - strandat 4089.706 kb on + strandat 4089.707 kb on - strandat 4089.707 kb on - strandat 4089.707 kb on - strandat 4089.707 kb on - strandat 4089.707 kb on - strandat 4089.779 kb on + strand, within AO353_18590at 4089.779 kb on + strand, within AO353_18590at 4089.780 kb on - strand, within AO353_18590at 4089.780 kb on - strand, within AO353_18590at 4089.780 kb on - strand, within AO353_18590at 4089.970 kb on + strand, within AO353_18590at 4089.971 kb on - strandat 4090.011 kb on + strand, within AO353_18590at 4090.011 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strandat 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strand, within AO353_18590at 4090.162 kb on + strandat 4090.162 kb on + strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.163 kb on - strand, within AO353_18590at 4090.165 kb on - strand, within AO353_18590

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,087,625 + AO353_18575 0.62 -1.0
4,087,626 - AO353_18575 0.62 -1.4
4,087,626 - AO353_18575 0.62 -0.6
4,087,626 - AO353_18575 0.62 +1.0
4,087,626 - AO353_18575 0.62 +0.4
4,087,626 - AO353_18575 0.62 -0.3
4,087,661 + AO353_18575 0.65 -0.3
4,087,661 + AO353_18575 0.65 +0.4
4,087,661 + AO353_18575 0.65 +0.6
4,087,662 - AO353_18575 0.65 -1.6
4,087,662 - AO353_18575 0.65 -0.7
4,087,662 - AO353_18575 0.65 -0.7
4,087,662 - AO353_18575 0.65 +0.6
4,087,662 - AO353_18575 0.65 -0.6
4,087,877 + AO353_18575 0.84 +0.6
4,087,877 + AO353_18575 0.84 +0.5
4,087,877 + AO353_18575 0.84 -0.6
4,087,877 + AO353_18575 0.84 +1.0
4,087,877 + AO353_18575 0.84 -0.8
4,087,964 + +1.4
4,087,964 + -0.3
4,087,965 - +0.3
4,088,013 - +0.0
4,088,074 + +0.8
4,088,074 + +0.8
4,088,075 - +1.0
4,088,075 - +0.6
4,088,075 - -0.7
4,088,456 + -0.0
4,088,467 - +0.7
4,088,637 + AO353_18585 0.16 -2.8
4,088,637 + AO353_18585 0.16 -0.6
4,088,637 + AO353_18585 0.16 -1.8
4,088,637 + AO353_18585 0.16 -1.3
4,088,637 + AO353_18585 0.16 -1.1
4,088,637 + AO353_18585 0.16 +0.1
4,088,637 + AO353_18585 0.16 -0.9
4,088,637 + AO353_18585 0.16 -0.4
4,088,637 + AO353_18585 0.16 -1.7
4,088,637 + AO353_18585 0.16 -1.6
4,088,638 - AO353_18585 0.16 -1.7
4,088,638 - AO353_18585 0.16 -0.5
4,088,638 - -0.4
4,088,638 - AO353_18585 0.16 -0.4
4,088,638 - AO353_18585 0.16 -2.7
4,088,638 - AO353_18585 0.16 +0.9
4,088,638 - AO353_18585 0.16 -1.1
4,088,638 - AO353_18585 0.16 -1.1
4,088,638 - AO353_18585 0.16 -1.8
4,088,638 - AO353_18585 0.16 -0.7
4,088,638 - AO353_18585 0.16 -0.7
4,088,638 - AO353_18585 0.16 -1.2
4,088,665 - AO353_18585 0.20 -0.4
4,088,727 + AO353_18585 0.27 -0.9
4,088,727 + AO353_18585 0.27 -0.7
4,088,727 + AO353_18585 0.27 -1.2
4,088,728 - AO353_18585 0.28 -1.7
4,088,728 - AO353_18585 0.28 -1.1
4,088,766 + AO353_18585 0.32 -1.6
4,088,767 - AO353_18585 0.32 -0.7
4,088,767 - AO353_18585 0.32 +0.2
4,088,820 + AO353_18585 0.39 -0.0
4,088,835 + AO353_18585 0.41 -1.4
4,088,836 - AO353_18585 0.41 -1.7
4,088,862 - AO353_18585 0.44 -0.7
4,088,877 + AO353_18585 0.46 +0.2
4,088,877 + AO353_18585 0.46 -3.3
4,088,878 - AO353_18585 0.46 -2.5
4,088,964 + AO353_18585 0.57 -1.2
4,088,964 + AO353_18585 0.57 -1.9
4,088,965 - AO353_18585 0.57 +1.0
4,088,989 + AO353_18585 0.60 -1.7
4,088,989 + AO353_18585 0.60 -0.4
4,088,990 - AO353_18585 0.61 -2.1
4,088,990 - AO353_18585 0.61 -2.1
4,089,023 + AO353_18585 0.65 -1.7
4,089,024 - AO353_18585 0.65 -1.4
4,089,165 + AO353_18585 0.83 +0.3
4,089,165 + +1.0
4,089,165 + AO353_18585 0.83 -1.9
4,089,165 + AO353_18585 0.83 -2.1
4,089,165 + AO353_18585 0.83 -1.4
4,089,166 - AO353_18585 0.83 -1.0
4,089,166 - AO353_18585 0.83 -0.5
4,089,166 - AO353_18585 0.83 -1.1
4,089,166 - AO353_18585 0.83 -1.2
4,089,166 - AO353_18585 0.83 -0.7
4,089,166 - AO353_18585 0.83 -1.7
4,089,166 - AO353_18585 0.83 +0.2
4,089,247 - +0.6
4,089,247 - -1.3
4,089,247 - -1.6
4,089,247 - -1.4
4,089,247 - -1.3
4,089,253 + -0.1
4,089,254 - -1.7
4,089,254 - -0.7
4,089,254 - -1.9
4,089,254 - -0.7
4,089,254 - -1.1
4,089,285 + -1.4
4,089,285 + +1.0
4,089,285 + -2.3
4,089,285 + -0.5
4,089,285 + -0.9
4,089,286 - -0.7
4,089,286 - +0.5
4,089,286 - -1.7
4,089,286 - -0.0
4,089,286 - -1.4
4,089,322 + -0.9
4,089,322 + -0.0
4,089,333 + -2.1
4,089,333 + -2.3
4,089,333 + -0.3
4,089,333 + -1.5
4,089,333 + +0.2
4,089,333 + -1.6
4,089,333 + -0.1
4,089,333 + +0.2
4,089,334 - -0.1
4,089,334 - -1.5
4,089,334 - +0.8
4,089,334 - +0.6
4,089,355 - +1.9
4,089,355 - +1.3
4,089,361 - +1.1
4,089,460 + -1.0
4,089,460 + +1.4
4,089,460 + -1.4
4,089,465 - -0.7
4,089,465 - +1.3
4,089,562 + -0.4
4,089,580 + -0.2
4,089,580 + +0.4
4,089,580 + -0.1
4,089,580 + -1.6
4,089,580 + -0.5
4,089,580 + -0.4
4,089,580 + -0.3
4,089,580 + -0.7
4,089,580 + -1.0
4,089,580 + -0.7
4,089,580 + +0.6
4,089,580 + -0.4
4,089,580 + +0.2
4,089,581 - -1.4
4,089,581 - +1.0
4,089,581 - +1.2
4,089,581 - -0.4
4,089,581 - -0.7
4,089,581 - -0.2
4,089,581 - -0.2
4,089,581 - -1.1
4,089,582 + -1.9
4,089,582 + +0.6
4,089,582 + -0.1
4,089,582 + +0.4
4,089,582 + +1.2
4,089,582 + -0.3
4,089,582 + -0.3
4,089,583 - +0.1
4,089,583 - +0.8
4,089,583 - -0.0
4,089,583 - +2.2
4,089,588 + -1.3
4,089,589 - +1.2
4,089,706 + -2.5
4,089,707 - +0.2
4,089,707 - +0.2
4,089,707 - +0.8
4,089,707 - -1.0
4,089,707 - -1.6
4,089,779 + AO353_18590 0.13 -1.8
4,089,779 + AO353_18590 0.13 +0.3
4,089,780 - AO353_18590 0.13 +0.8
4,089,780 - AO353_18590 0.13 -2.1
4,089,780 - AO353_18590 0.13 +0.2
4,089,970 + AO353_18590 0.25 -1.4
4,089,971 - +1.6
4,090,011 + AO353_18590 0.27 +0.9
4,090,011 + AO353_18590 0.27 -1.7
4,090,162 + AO353_18590 0.37 -1.2
4,090,162 + AO353_18590 0.37 -0.6
4,090,162 + AO353_18590 0.37 +0.4
4,090,162 + AO353_18590 0.37 -1.0
4,090,162 + AO353_18590 0.37 -0.0
4,090,162 + AO353_18590 0.37 -0.2
4,090,162 + AO353_18590 0.37 -1.1
4,090,162 + -0.0
4,090,162 + AO353_18590 0.37 +2.2
4,090,162 + AO353_18590 0.37 -1.4
4,090,162 + AO353_18590 0.37 -0.3
4,090,162 + AO353_18590 0.37 -1.0
4,090,162 + AO353_18590 0.37 -0.9
4,090,162 + +0.6
4,090,162 + AO353_18590 0.37 -2.3
4,090,163 - AO353_18590 0.37 -0.0
4,090,163 - AO353_18590 0.37 +0.5
4,090,163 - AO353_18590 0.37 -0.2
4,090,163 - AO353_18590 0.37 -0.4
4,090,163 - AO353_18590 0.37 -0.0
4,090,163 - AO353_18590 0.37 -0.6
4,090,163 - AO353_18590 0.37 -1.7
4,090,163 - AO353_18590 0.37 -0.2
4,090,163 - AO353_18590 0.37 -1.5
4,090,163 - AO353_18590 0.37 -0.2
4,090,163 - AO353_18590 0.37 +0.2
4,090,163 - AO353_18590 0.37 +0.7
4,090,165 - AO353_18590 0.37 -1.2

Or see this region's nucleotide sequence