Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13150

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13140 and AO353_13145 are separated by 93 nucleotidesAO353_13145 and AO353_13150 are separated by 12 nucleotidesAO353_13150 and AO353_13155 are separated by 96 nucleotides AO353_13140: AO353_13140 - tRNA dimethylallyltransferase, at 2,912,523 to 2,913,494 _13140 AO353_13145: AO353_13145 - RNA-binding protein, at 2,913,588 to 2,913,848 _13145 AO353_13150: AO353_13150 - GTPase HflX, at 2,913,861 to 2,915,162 _13150 AO353_13155: AO353_13155 - hypothetical protein, at 2,915,259 to 2,916,425 _13155 Position (kb) 2913 2914 2915 2916Strain fitness (log2 ratio) -2 -1 0 1 2at 2913.050 kb on + strand, within AO353_13140at 2913.125 kb on + strand, within AO353_13140at 2913.125 kb on + strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.180 kb on - strand, within AO353_13140at 2913.183 kb on - strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.277 kb on + strand, within AO353_13140at 2913.278 kb on - strand, within AO353_13140at 2913.286 kb on + strand, within AO353_13140at 2913.286 kb on + strand, within AO353_13140at 2913.287 kb on - strand, within AO353_13140at 2913.415 kb on + strandat 2913.465 kb on + strandat 2913.513 kb on + strandat 2913.535 kb on + strandat 2913.548 kb on + strandat 2913.548 kb on + strandat 2913.552 kb on + strandat 2913.552 kb on + strandat 2913.558 kb on + strandat 2913.558 kb on + strandat 2913.558 kb on + strandat 2913.572 kb on + strandat 2913.839 kb on + strandat 2913.849 kb on + strandat 2913.849 kb on + strandat 2913.849 kb on + strandat 2913.850 kb on - strandat 2913.998 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.029 kb on + strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.030 kb on - strand, within AO353_13150at 2914.097 kb on + strand, within AO353_13150at 2914.097 kb on + strand, within AO353_13150at 2914.098 kb on - strand, within AO353_13150at 2914.133 kb on + strand, within AO353_13150at 2914.133 kb on + strand, within AO353_13150at 2914.134 kb on - strand, within AO353_13150at 2914.190 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.254 kb on + strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.255 kb on - strand, within AO353_13150at 2914.262 kb on + strand, within AO353_13150at 2914.476 kb on + strand, within AO353_13150at 2914.476 kb on + strand, within AO353_13150at 2914.477 kb on - strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.478 kb on + strand, within AO353_13150at 2914.479 kb on - strand, within AO353_13150at 2914.479 kb on - strand, within AO353_13150at 2914.607 kb on - strand, within AO353_13150at 2914.670 kb on + strand, within AO353_13150at 2914.809 kb on + strand, within AO353_13150at 2914.809 kb on + strand, within AO353_13150at 2914.809 kb on + strand, within AO353_13150at 2914.809 kb on + strand, within AO353_13150at 2914.809 kb on + strand, within AO353_13150at 2914.809 kb on + strand, within AO353_13150at 2914.810 kb on - strand, within AO353_13150at 2914.810 kb on - strand, within AO353_13150at 2914.810 kb on - strand, within AO353_13150at 2914.811 kb on + strand, within AO353_13150at 2914.812 kb on - strand, within AO353_13150at 2914.812 kb on - strand, within AO353_13150at 2914.812 kb on - strand, within AO353_13150at 2915.160 kb on + strandat 2915.160 kb on + strandat 2915.204 kb on + strandat 2915.204 kb on + strandat 2915.204 kb on + strandat 2915.204 kb on + strandat 2915.204 kb on + strandat 2915.292 kb on - strandat 2915.312 kb on + strandat 2915.502 kb on + strand, within AO353_13155at 2915.514 kb on + strand, within AO353_13155at 2915.562 kb on + strand, within AO353_13155at 2915.595 kb on + strand, within AO353_13155at 2915.595 kb on + strand, within AO353_13155at 2915.595 kb on + strand, within AO353_13155at 2915.596 kb on - strand, within AO353_13155at 2915.619 kb on + strand, within AO353_13155at 2915.650 kb on - strand, within AO353_13155at 2915.716 kb on - strand, within AO353_13155

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,913,050 + AO353_13140 0.54 -0.8
2,913,125 + AO353_13140 0.62 +0.0
2,913,125 + AO353_13140 0.62 +0.4
2,913,126 - AO353_13140 0.62 -1.8
2,913,126 - AO353_13140 0.62 +0.0
2,913,126 - AO353_13140 0.62 -1.7
2,913,180 - AO353_13140 0.68 -0.6
2,913,183 - AO353_13140 0.68 -0.1
2,913,242 + AO353_13140 0.74 +0.2
2,913,242 + AO353_13140 0.74 +0.0
2,913,242 + AO353_13140 0.74 -1.7
2,913,277 + AO353_13140 0.78 +0.4
2,913,278 - AO353_13140 0.78 +0.4
2,913,286 + AO353_13140 0.78 -1.6
2,913,286 + AO353_13140 0.78 +2.0
2,913,287 - AO353_13140 0.79 -1.8
2,913,415 + -1.6
2,913,465 + +0.0
2,913,513 + +0.4
2,913,535 + -0.1
2,913,548 + +0.6
2,913,548 + +0.4
2,913,552 + -0.7
2,913,552 + -1.8
2,913,558 + -0.6
2,913,558 + +1.2
2,913,558 + -1.3
2,913,572 + -1.2
2,913,839 + -0.6
2,913,849 + -0.1
2,913,849 + -0.9
2,913,849 + -0.6
2,913,850 - -2.4
2,913,998 + AO353_13150 0.11 +0.2
2,914,029 + AO353_13150 0.13 -0.3
2,914,029 + AO353_13150 0.13 +0.5
2,914,029 + AO353_13150 0.13 -1.3
2,914,029 + AO353_13150 0.13 -1.7
2,914,029 + AO353_13150 0.13 -1.9
2,914,030 - AO353_13150 0.13 -0.5
2,914,030 - AO353_13150 0.13 +1.4
2,914,030 - AO353_13150 0.13 +1.0
2,914,030 - AO353_13150 0.13 -0.3
2,914,030 - AO353_13150 0.13 -0.4
2,914,030 - AO353_13150 0.13 -1.0
2,914,097 + AO353_13150 0.18 -0.4
2,914,097 + AO353_13150 0.18 -2.6
2,914,098 - AO353_13150 0.18 -1.3
2,914,133 + AO353_13150 0.21 +0.4
2,914,133 + AO353_13150 0.21 -0.4
2,914,134 - AO353_13150 0.21 -0.8
2,914,190 + AO353_13150 0.25 +0.2
2,914,254 + AO353_13150 0.30 -0.7
2,914,254 + AO353_13150 0.30 -1.0
2,914,254 + AO353_13150 0.30 -1.2
2,914,254 + AO353_13150 0.30 -1.6
2,914,254 + AO353_13150 0.30 -1.8
2,914,254 + AO353_13150 0.30 -0.7
2,914,255 - AO353_13150 0.30 -1.1
2,914,255 - AO353_13150 0.30 +0.4
2,914,255 - AO353_13150 0.30 -2.6
2,914,255 - AO353_13150 0.30 +1.0
2,914,255 - AO353_13150 0.30 -1.6
2,914,255 - AO353_13150 0.30 +0.2
2,914,255 - AO353_13150 0.30 -0.6
2,914,262 + AO353_13150 0.31 -1.9
2,914,476 + AO353_13150 0.47 +0.8
2,914,476 + AO353_13150 0.47 -0.2
2,914,477 - AO353_13150 0.47 -0.6
2,914,478 + AO353_13150 0.47 -0.2
2,914,478 + AO353_13150 0.47 -0.5
2,914,478 + AO353_13150 0.47 -0.3
2,914,478 + AO353_13150 0.47 +1.7
2,914,478 + AO353_13150 0.47 -0.1
2,914,479 - AO353_13150 0.47 -0.7
2,914,479 - AO353_13150 0.47 +1.3
2,914,607 - AO353_13150 0.57 -0.1
2,914,670 + AO353_13150 0.62 -0.7
2,914,809 + AO353_13150 0.73 -1.2
2,914,809 + AO353_13150 0.73 +0.4
2,914,809 + AO353_13150 0.73 -0.3
2,914,809 + AO353_13150 0.73 +0.1
2,914,809 + AO353_13150 0.73 -0.1
2,914,809 + AO353_13150 0.73 -0.2
2,914,810 - AO353_13150 0.73 -2.0
2,914,810 - AO353_13150 0.73 -1.0
2,914,810 - AO353_13150 0.73 -1.6
2,914,811 + AO353_13150 0.73 -0.3
2,914,812 - AO353_13150 0.73 +0.2
2,914,812 - AO353_13150 0.73 -0.3
2,914,812 - AO353_13150 0.73 +1.6
2,915,160 + +0.9
2,915,160 + -1.8
2,915,204 + -0.1
2,915,204 + -0.6
2,915,204 + -0.7
2,915,204 + -0.8
2,915,204 + +1.2
2,915,292 - -1.6
2,915,312 + -1.3
2,915,502 + AO353_13155 0.21 +0.2
2,915,514 + AO353_13155 0.22 +0.2
2,915,562 + AO353_13155 0.26 -0.3
2,915,595 + AO353_13155 0.29 -0.4
2,915,595 + AO353_13155 0.29 +0.3
2,915,595 + AO353_13155 0.29 -1.6
2,915,596 - AO353_13155 0.29 +0.4
2,915,619 + AO353_13155 0.31 +0.5
2,915,650 - AO353_13155 0.34 -0.6
2,915,716 - AO353_13155 0.39 +2.2

Or see this region's nucleotide sequence