Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13120

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13115 and AO353_13120 are separated by 63 nucleotidesAO353_13120 and AO353_13125 overlap by 13 nucleotidesAO353_13125 and AO353_13130 are separated by 0 nucleotides AO353_13115: AO353_13115 - epoxyqueuosine reductase, at 2,906,094 to 2,907,158 _13115 AO353_13120: AO353_13120 - carbohydrate kinase, at 2,907,222 to 2,908,721 _13120 AO353_13125: AO353_13125 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 2,908,709 to 2,909,179 _13125 AO353_13130: AO353_13130 - N-acetylmuramoyl-L-alanine amidase, at 2,909,180 to 2,910,616 _13130 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2906.246 kb on - strand, within AO353_13115at 2906.489 kb on - strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strandat 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.667 kb on + strand, within AO353_13115at 2906.667 kb on + strand, within AO353_13115at 2906.845 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.911 kb on + strand, within AO353_13115at 2906.911 kb on + strand, within AO353_13115at 2906.911 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.996 kb on - strand, within AO353_13115at 2906.996 kb on - strand, within AO353_13115at 2906.996 kb on - strand, within AO353_13115at 2907.131 kb on + strandat 2907.131 kb on + strandat 2907.132 kb on - strandat 2907.132 kb on - strandat 2907.146 kb on + strandat 2907.146 kb on + strandat 2907.146 kb on + strandat 2907.146 kb on + strandat 2907.147 kb on - strandat 2907.188 kb on + strandat 2907.188 kb on + strandat 2907.188 kb on + strandat 2907.188 kb on + strandat 2907.188 kb on + strandat 2907.188 kb on + strandat 2907.189 kb on - strandat 2907.189 kb on - strandat 2907.189 kb on - strandat 2907.189 kb on - strandat 2907.189 kb on - strandat 2907.190 kb on + strandat 2907.190 kb on + strandat 2907.190 kb on + strandat 2907.190 kb on + strandat 2907.190 kb on + strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.191 kb on - strandat 2907.245 kb on - strandat 2907.245 kb on - strandat 2907.245 kb on - strandat 2907.245 kb on - strandat 2907.258 kb on + strandat 2907.259 kb on - strandat 2907.432 kb on + strand, within AO353_13120at 2907.528 kb on + strand, within AO353_13120at 2907.528 kb on + strand, within AO353_13120at 2907.528 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.648 kb on + strand, within AO353_13120at 2907.649 kb on - strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2907.777 kb on + strand, within AO353_13120at 2908.081 kb on + strand, within AO353_13120at 2908.081 kb on + strand, within AO353_13120at 2908.081 kb on + strand, within AO353_13120at 2908.081 kb on + strand, within AO353_13120at 2908.082 kb on - strand, within AO353_13120at 2908.082 kb on - strand, within AO353_13120at 2908.082 kb on - strand, within AO353_13120at 2908.352 kb on - strand, within AO353_13120at 2908.419 kb on + strand, within AO353_13120at 2908.419 kb on + strand, within AO353_13120at 2908.637 kb on + strandat 2908.637 kb on + strandat 2908.638 kb on - strandat 2908.638 kb on - strandat 2908.719 kb on + strandat 2908.719 kb on + strandat 2908.719 kb on + strandat 2908.727 kb on + strandat 2909.177 kb on + strandat 2909.177 kb on + strandat 2909.194 kb on + strandat 2909.194 kb on + strandat 2909.194 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,906,246 - AO353_13115 0.14 +0.4
2,906,489 - AO353_13115 0.37 -1.3
2,906,514 + AO353_13115 0.39 -1.8
2,906,514 + AO353_13115 0.39 +2.0
2,906,514 + AO353_13115 0.39 +1.2
2,906,514 + AO353_13115 0.39 -0.7
2,906,514 + AO353_13115 0.39 -1.3
2,906,514 + AO353_13115 0.39 -0.2
2,906,514 + AO353_13115 0.39 +0.6
2,906,514 + AO353_13115 0.39 +0.5
2,906,514 + AO353_13115 0.39 +0.1
2,906,514 + AO353_13115 0.39 -0.5
2,906,514 + AO353_13115 0.39 +0.5
2,906,514 + AO353_13115 0.39 +1.0
2,906,514 + AO353_13115 0.39 -0.7
2,906,514 + AO353_13115 0.39 +1.2
2,906,514 + AO353_13115 0.39 -0.6
2,906,514 + AO353_13115 0.39 +0.5
2,906,515 - AO353_13115 0.40 -0.1
2,906,515 - AO353_13115 0.40 -1.8
2,906,515 - AO353_13115 0.40 -0.5
2,906,515 - AO353_13115 0.40 +0.3
2,906,515 - AO353_13115 0.40 +0.4
2,906,515 - AO353_13115 0.40 -0.1
2,906,515 - AO353_13115 0.40 -1.4
2,906,515 - AO353_13115 0.40 +2.3
2,906,515 - AO353_13115 0.40 +0.3
2,906,515 - AO353_13115 0.40 +0.5
2,906,515 - AO353_13115 0.40 +0.2
2,906,515 - AO353_13115 0.40 -1.5
2,906,515 - AO353_13115 0.40 +1.2
2,906,515 - AO353_13115 0.40 -0.4
2,906,515 - AO353_13115 0.40 -0.3
2,906,515 - AO353_13115 0.40 +1.0
2,906,515 - AO353_13115 0.40 +0.5
2,906,515 - +0.5
2,906,515 - AO353_13115 0.40 +0.0
2,906,515 - AO353_13115 0.40 +0.5
2,906,515 - AO353_13115 0.40 +0.0
2,906,515 - AO353_13115 0.40 +0.2
2,906,518 + AO353_13115 0.40 -1.0
2,906,518 + AO353_13115 0.40 -0.8
2,906,518 + AO353_13115 0.40 +0.1
2,906,518 + AO353_13115 0.40 -0.3
2,906,519 - AO353_13115 0.40 +0.7
2,906,519 - AO353_13115 0.40 +0.5
2,906,519 - AO353_13115 0.40 +0.7
2,906,519 - AO353_13115 0.40 +0.2
2,906,519 - AO353_13115 0.40 +0.6
2,906,519 - AO353_13115 0.40 -0.2
2,906,519 - AO353_13115 0.40 +1.3
2,906,519 - AO353_13115 0.40 -0.5
2,906,644 + AO353_13115 0.52 +0.0
2,906,644 + AO353_13115 0.52 +0.5
2,906,644 + AO353_13115 0.52 +0.3
2,906,644 + AO353_13115 0.52 -0.8
2,906,644 + AO353_13115 0.52 -0.1
2,906,644 + AO353_13115 0.52 +0.0
2,906,645 - AO353_13115 0.52 +0.2
2,906,645 - AO353_13115 0.52 -0.0
2,906,645 - AO353_13115 0.52 -1.1
2,906,645 - AO353_13115 0.52 +0.8
2,906,645 - AO353_13115 0.52 -0.6
2,906,645 - AO353_13115 0.52 -0.4
2,906,645 - AO353_13115 0.52 +0.5
2,906,667 + AO353_13115 0.54 +2.0
2,906,667 + AO353_13115 0.54 -0.5
2,906,845 + AO353_13115 0.71 +0.7
2,906,857 + AO353_13115 0.72 -0.3
2,906,857 + AO353_13115 0.72 +1.3
2,906,857 + AO353_13115 0.72 +0.0
2,906,857 + AO353_13115 0.72 -0.1
2,906,857 + AO353_13115 0.72 -0.6
2,906,857 + AO353_13115 0.72 +0.0
2,906,857 + AO353_13115 0.72 -1.4
2,906,857 + AO353_13115 0.72 -0.2
2,906,858 - AO353_13115 0.72 +0.6
2,906,858 - AO353_13115 0.72 -0.9
2,906,858 - AO353_13115 0.72 +1.6
2,906,858 - AO353_13115 0.72 +0.6
2,906,858 - AO353_13115 0.72 -2.2
2,906,858 - AO353_13115 0.72 -0.8
2,906,858 - AO353_13115 0.72 +0.0
2,906,911 + AO353_13115 0.77 +0.3
2,906,911 + AO353_13115 0.77 +0.5
2,906,911 + AO353_13115 0.77 +2.0
2,906,995 + AO353_13115 0.85 +0.6
2,906,995 + AO353_13115 0.85 +0.7
2,906,995 + AO353_13115 0.85 -0.2
2,906,995 + AO353_13115 0.85 -1.4
2,906,995 + AO353_13115 0.85 +1.0
2,906,996 - AO353_13115 0.85 -1.4
2,906,996 - AO353_13115 0.85 -1.2
2,906,996 - AO353_13115 0.85 -0.7
2,907,131 + +0.0
2,907,131 + -0.5
2,907,132 - -0.5
2,907,132 - -0.4
2,907,146 + -0.3
2,907,146 + -0.8
2,907,146 + +0.5
2,907,146 + +0.8
2,907,147 - -1.4
2,907,188 + +1.0
2,907,188 + -0.4
2,907,188 + -0.4
2,907,188 + +0.8
2,907,188 + +0.3
2,907,188 + -1.0
2,907,189 - -0.6
2,907,189 - -0.2
2,907,189 - +0.0
2,907,189 - -2.5
2,907,189 - +1.0
2,907,190 + -0.1
2,907,190 + +0.0
2,907,190 + +0.7
2,907,190 + +0.0
2,907,190 + +0.0
2,907,191 - -1.5
2,907,191 - -1.3
2,907,191 - -0.4
2,907,191 - -1.0
2,907,191 - -2.5
2,907,191 - +1.5
2,907,191 - +0.5
2,907,191 - -1.1
2,907,191 - -0.8
2,907,191 - +0.0
2,907,191 - -2.0
2,907,245 - -2.5
2,907,245 - -0.4
2,907,245 - -2.4
2,907,245 - -0.7
2,907,258 + +0.2
2,907,259 - -1.5
2,907,432 + AO353_13120 0.14 -1.9
2,907,528 + AO353_13120 0.20 -0.8
2,907,528 + AO353_13120 0.20 +0.4
2,907,528 + AO353_13120 0.20 -0.3
2,907,648 + AO353_13120 0.28 -0.3
2,907,648 + AO353_13120 0.28 +0.2
2,907,648 + AO353_13120 0.28 -0.4
2,907,648 + AO353_13120 0.28 +0.0
2,907,648 + AO353_13120 0.28 +0.0
2,907,648 + AO353_13120 0.28 -0.7
2,907,648 + AO353_13120 0.28 -0.2
2,907,648 + AO353_13120 0.28 -0.1
2,907,648 + AO353_13120 0.28 -1.7
2,907,649 - AO353_13120 0.28 -0.8
2,907,777 + AO353_13120 0.37 +1.5
2,907,777 + AO353_13120 0.37 -0.8
2,907,777 + AO353_13120 0.37 +0.6
2,907,777 + AO353_13120 0.37 -1.5
2,907,777 + AO353_13120 0.37 +0.8
2,907,777 + AO353_13120 0.37 +0.6
2,907,777 + AO353_13120 0.37 -0.3
2,908,081 + AO353_13120 0.57 +0.5
2,908,081 + AO353_13120 0.57 +0.8
2,908,081 + AO353_13120 0.57 +0.5
2,908,081 + AO353_13120 0.57 -0.7
2,908,082 - AO353_13120 0.57 -0.3
2,908,082 - AO353_13120 0.57 -3.7
2,908,082 - AO353_13120 0.57 -2.5
2,908,352 - AO353_13120 0.75 -1.7
2,908,419 + AO353_13120 0.80 +0.5
2,908,419 + AO353_13120 0.80 +0.6
2,908,637 + +0.7
2,908,637 + -1.4
2,908,638 - +1.0
2,908,638 - -1.3
2,908,719 + -2.2
2,908,719 + +0.1
2,908,719 + -0.8
2,908,727 + -1.7
2,909,177 + -0.3
2,909,177 + -2.3
2,909,194 + -0.5
2,909,194 + -0.7
2,909,194 + +0.8

Or see this region's nucleotide sequence