Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09035 and AO353_09040 are separated by 4 nucleotides AO353_09040 and AO353_09045 are separated by 13 nucleotides AO353_09045 and AO353_09050 are separated by 2 nucleotides
AO353_09035: AO353_09035 - diaminopimelate decarboxylase, at 1,984,162 to 1,985,409
_09035
AO353_09040: AO353_09040 - diaminopimelate epimerase, at 1,985,414 to 1,986,244
_09040
AO353_09045: AO353_09045 - hypothetical protein, at 1,986,258 to 1,986,983
_09045
AO353_09050: AO353_09050 - recombinase XerC, at 1,986,986 to 1,987,885
_09050
Position (kb)
1985
1986
1987 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1985.407 kb on + strand at 1985.428 kb on + strand at 1985.429 kb on - strand at 1985.500 kb on + strand, within AO353_09040 at 1985.501 kb on - strand, within AO353_09040 at 1985.501 kb on - strand, within AO353_09040 at 1985.834 kb on + strand, within AO353_09040 at 1986.213 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.219 kb on + strand at 1986.220 kb on - strand at 1986.221 kb on + strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.222 kb on - strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.255 kb on + strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.256 kb on - strand at 1986.885 kb on + strand, within AO353_09045 at 1986.885 kb on + strand, within AO353_09045 at 1986.885 kb on + strand, within AO353_09045 at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.913 kb on + strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.914 kb on - strand at 1986.918 kb on + strand at 1986.918 kb on + strand at 1986.918 kb on + strand at 1986.918 kb on + strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.919 kb on - strand at 1986.967 kb on + strand at 1986.967 kb on + strand at 1986.977 kb on - strand at 1987.226 kb on + strand, within AO353_09050 at 1987.226 kb on + strand, within AO353_09050 at 1987.227 kb on - strand, within AO353_09050
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,985,407 + -0.6 1,985,428 + +0.7 1,985,429 - -0.4 1,985,500 + AO353_09040 0.10 -1.5 1,985,501 - AO353_09040 0.10 -1.0 1,985,501 - AO353_09040 0.10 +0.8 1,985,834 + AO353_09040 0.51 -0.6 1,986,213 + -0.9 1,986,219 + -0.3 1,986,219 + +1.2 1,986,219 + +1.4 1,986,219 + -1.7 1,986,220 - -2.4 1,986,221 + +0.7 1,986,222 - +0.3 1,986,222 - +0.7 1,986,222 - -0.8 1,986,222 - -0.2 1,986,255 + -0.6 1,986,255 + -0.8 1,986,255 + +0.2 1,986,255 + +0.4 1,986,255 + +1.6 1,986,255 + +0.6 1,986,255 + -0.4 1,986,255 + -1.9 1,986,255 + -0.8 1,986,256 - -1.5 1,986,256 - +0.6 1,986,256 - -0.4 1,986,256 - -0.2 1,986,256 - -0.0 1,986,256 - -1.2 1,986,256 - -1.4 1,986,885 + AO353_09045 0.86 +0.4 1,986,885 + AO353_09045 0.86 -0.8 1,986,885 + AO353_09045 0.86 +1.8 1,986,913 + +0.1 1,986,913 + -0.6 1,986,913 + +0.8 1,986,913 + +0.1 1,986,913 + -0.3 1,986,913 + +0.9 1,986,914 - +1.2 1,986,914 - -0.8 1,986,914 - +1.2 1,986,914 - +0.4 1,986,914 - +0.5 1,986,914 - +0.2 1,986,914 - -0.5 1,986,918 + +0.3 1,986,918 + -0.6 1,986,918 + +0.3 1,986,918 + +0.5 1,986,919 - -1.4 1,986,919 - +0.1 1,986,919 - -0.5 1,986,919 - +0.4 1,986,919 - +1.7 1,986,919 - -1.5 1,986,967 + -0.1 1,986,967 + +0.2 1,986,977 - -1.3 1,987,226 + AO353_09050 0.27 +0.4 1,987,226 + AO353_09050 0.27 -1.4 1,987,227 - AO353_09050 0.27 -0.8
Or see this region's nucleotide sequence