Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06325

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06320 and AO353_06325 are separated by 239 nucleotidesAO353_06325 and AO353_06330 overlap by 6 nucleotidesAO353_06330 and AO353_06335 are separated by 71 nucleotides AO353_06320: AO353_06320 - AsnC family transcriptional regulator, at 1,409,506 to 1,409,985 _06320 AO353_06325: AO353_06325 - hypothetical protein, at 1,410,225 to 1,410,434 _06325 AO353_06330: AO353_06330 - pseudouridine synthase, at 1,410,429 to 1,411,070 _06330 AO353_06335: AO353_06335 - AMP nucleosidase, at 1,411,142 to 1,412,605 _06335 Position (kb) 1410 1411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1409.287 kb on - strandat 1409.386 kb on + strandat 1409.386 kb on + strandat 1409.387 kb on - strandat 1409.387 kb on - strandat 1409.387 kb on - strandat 1409.387 kb on - strandat 1409.387 kb on - strandat 1409.393 kb on - strandat 1409.393 kb on - strandat 1409.483 kb on + strandat 1409.487 kb on + strandat 1409.603 kb on + strand, within AO353_06320at 1409.650 kb on + strand, within AO353_06320at 1409.650 kb on + strand, within AO353_06320at 1409.650 kb on + strand, within AO353_06320at 1409.650 kb on + strand, within AO353_06320at 1409.651 kb on - strand, within AO353_06320at 1409.651 kb on - strand, within AO353_06320at 1409.710 kb on + strand, within AO353_06320at 1409.710 kb on + strand, within AO353_06320at 1409.711 kb on - strand, within AO353_06320at 1409.711 kb on - strand, within AO353_06320at 1409.711 kb on - strand, within AO353_06320at 1409.711 kb on - strand, within AO353_06320at 1409.827 kb on + strand, within AO353_06320at 1409.930 kb on + strand, within AO353_06320at 1409.930 kb on + strand, within AO353_06320at 1409.931 kb on - strand, within AO353_06320at 1409.931 kb on - strand, within AO353_06320at 1409.983 kb on + strandat 1409.983 kb on + strandat 1409.984 kb on - strandat 1409.984 kb on - strandat 1409.984 kb on - strandat 1409.984 kb on - strandat 1409.984 kb on - strandat 1409.984 kb on - strandat 1410.037 kb on + strandat 1410.037 kb on + strandat 1410.037 kb on + strandat 1410.037 kb on + strandat 1410.038 kb on - strandat 1410.038 kb on - strandat 1410.038 kb on - strandat 1410.038 kb on - strandat 1410.038 kb on - strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.049 kb on + strandat 1410.050 kb on + strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.050 kb on - strandat 1410.079 kb on + strandat 1410.127 kb on + strandat 1410.128 kb on - strandat 1410.181 kb on + strandat 1410.181 kb on + strandat 1410.181 kb on + strandat 1410.182 kb on - strandat 1410.182 kb on - strandat 1410.238 kb on + strandat 1410.239 kb on - strandat 1410.239 kb on - strandat 1410.239 kb on - strandat 1410.239 kb on - strandat 1410.269 kb on - strand, within AO353_06325at 1410.281 kb on + strand, within AO353_06325at 1410.281 kb on + strand, within AO353_06325at 1410.281 kb on + strand, within AO353_06325at 1410.281 kb on + strand, within AO353_06325at 1410.282 kb on - strand, within AO353_06325at 1410.282 kb on - strand, within AO353_06325at 1410.430 kb on + strandat 1410.430 kb on + strandat 1410.430 kb on + strandat 1410.430 kb on + strandat 1410.431 kb on - strandat 1410.431 kb on - strandat 1410.431 kb on - strandat 1410.431 kb on - strandat 1410.431 kb on - strandat 1410.432 kb on + strandat 1410.432 kb on + strandat 1410.432 kb on + strandat 1410.432 kb on + strandat 1410.432 kb on + strandat 1410.433 kb on - strandat 1410.433 kb on - strandat 1410.433 kb on - strandat 1410.433 kb on - strandat 1410.433 kb on - strandat 1410.560 kb on + strand, within AO353_06330at 1410.639 kb on + strand, within AO353_06330at 1410.639 kb on + strand, within AO353_06330at 1410.639 kb on + strand, within AO353_06330at 1410.639 kb on + strand, within AO353_06330at 1410.639 kb on + strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.640 kb on - strand, within AO353_06330at 1410.753 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.760 kb on + strand, within AO353_06330at 1410.761 kb on - strand, within AO353_06330at 1410.761 kb on - strand, within AO353_06330at 1410.761 kb on - strand, within AO353_06330at 1410.761 kb on - strand, within AO353_06330at 1410.868 kb on + strand, within AO353_06330at 1410.869 kb on - strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.889 kb on + strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1410.890 kb on - strand, within AO353_06330at 1411.086 kb on + strandat 1411.086 kb on + strandat 1411.086 kb on + strandat 1411.087 kb on - strandat 1411.087 kb on - strandat 1411.108 kb on + strandat 1411.108 kb on + strandat 1411.108 kb on + strandat 1411.108 kb on + strandat 1411.109 kb on - strandat 1411.109 kb on - strandat 1411.109 kb on - strandat 1411.124 kb on - strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.263 kb on + strandat 1411.264 kb on - strandat 1411.264 kb on - strandat 1411.264 kb on - strandat 1411.264 kb on - strandat 1411.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,409,287 - -0.5
1,409,386 + +0.2
1,409,386 + -0.7
1,409,387 - +0.3
1,409,387 - +0.5
1,409,387 - -0.8
1,409,387 - +0.3
1,409,387 - +0.9
1,409,393 - +0.6
1,409,393 - -0.8
1,409,483 + -2.0
1,409,487 + -1.4
1,409,603 + AO353_06320 0.20 -1.2
1,409,650 + AO353_06320 0.30 +0.5
1,409,650 + AO353_06320 0.30 +0.7
1,409,650 + AO353_06320 0.30 -0.4
1,409,650 + AO353_06320 0.30 -0.5
1,409,651 - AO353_06320 0.30 +0.8
1,409,651 - AO353_06320 0.30 +1.1
1,409,710 + AO353_06320 0.42 +1.1
1,409,710 + AO353_06320 0.42 -0.2
1,409,711 - AO353_06320 0.43 +0.3
1,409,711 - AO353_06320 0.43 -0.1
1,409,711 - AO353_06320 0.43 -0.4
1,409,711 - AO353_06320 0.43 +0.2
1,409,827 + AO353_06320 0.67 +0.9
1,409,930 + AO353_06320 0.88 -1.5
1,409,930 + AO353_06320 0.88 +1.3
1,409,931 - AO353_06320 0.89 +0.9
1,409,931 - AO353_06320 0.89 -0.3
1,409,983 + -1.1
1,409,983 + +2.3
1,409,984 - -0.5
1,409,984 - +0.4
1,409,984 - -0.2
1,409,984 - -0.0
1,409,984 - -0.5
1,409,984 - +1.1
1,410,037 + -0.1
1,410,037 + -0.7
1,410,037 + -0.6
1,410,037 + +0.1
1,410,038 - -0.4
1,410,038 - -0.3
1,410,038 - -0.7
1,410,038 - -0.4
1,410,038 - -0.6
1,410,049 + -0.9
1,410,049 + +0.2
1,410,049 + -0.4
1,410,049 + -0.9
1,410,049 + -0.9
1,410,049 + +0.1
1,410,049 + -1.3
1,410,049 + +0.9
1,410,049 + +1.2
1,410,049 + -0.3
1,410,049 + -0.8
1,410,049 + -1.2
1,410,049 + -1.0
1,410,049 + -0.1
1,410,049 + -0.3
1,410,049 + +0.5
1,410,049 + -1.9
1,410,049 + -1.4
1,410,049 + +0.2
1,410,049 + -0.1
1,410,049 + -0.3
1,410,050 + +0.5
1,410,050 - +1.1
1,410,050 - -0.7
1,410,050 - -0.9
1,410,050 - -0.1
1,410,050 - +1.8
1,410,050 - +0.3
1,410,050 - +1.7
1,410,050 - -2.0
1,410,050 - +0.5
1,410,050 - +0.5
1,410,050 - +1.0
1,410,050 - +0.2
1,410,079 + -1.2
1,410,127 + -1.1
1,410,128 - +0.5
1,410,181 + +0.2
1,410,181 + -0.6
1,410,181 + +0.5
1,410,182 - +1.3
1,410,182 - -0.6
1,410,238 + +0.9
1,410,239 - -1.1
1,410,239 - +0.0
1,410,239 - +0.9
1,410,239 - +0.3
1,410,269 - AO353_06325 0.21 -1.2
1,410,281 + AO353_06325 0.27 +0.1
1,410,281 + AO353_06325 0.27 -1.5
1,410,281 + AO353_06325 0.27 -0.7
1,410,281 + AO353_06325 0.27 -3.4
1,410,282 - AO353_06325 0.27 -0.3
1,410,282 - AO353_06325 0.27 -1.2
1,410,430 + +1.3
1,410,430 + -1.8
1,410,430 + -0.2
1,410,430 + +1.3
1,410,431 - +0.5
1,410,431 - -1.1
1,410,431 - +0.5
1,410,431 - -0.4
1,410,431 - +0.3
1,410,432 + -0.5
1,410,432 + -1.2
1,410,432 + -0.1
1,410,432 + -0.2
1,410,432 + -0.0
1,410,433 - +0.5
1,410,433 - +0.4
1,410,433 - -0.8
1,410,433 - -0.9
1,410,433 - -0.7
1,410,560 + AO353_06330 0.20 +1.5
1,410,639 + AO353_06330 0.33 +0.5
1,410,639 + AO353_06330 0.33 +0.5
1,410,639 + AO353_06330 0.33 +0.6
1,410,639 + AO353_06330 0.33 -0.7
1,410,639 + AO353_06330 0.33 +0.8
1,410,640 - AO353_06330 0.33 -1.9
1,410,640 - AO353_06330 0.33 +0.2
1,410,640 - AO353_06330 0.33 -0.2
1,410,640 - AO353_06330 0.33 +0.1
1,410,640 - AO353_06330 0.33 +1.5
1,410,640 - AO353_06330 0.33 -0.4
1,410,640 - AO353_06330 0.33 +0.5
1,410,753 + AO353_06330 0.50 +0.4
1,410,760 + AO353_06330 0.52 +0.3
1,410,760 + AO353_06330 0.52 -0.9
1,410,760 + AO353_06330 0.52 -0.5
1,410,760 + AO353_06330 0.52 +2.1
1,410,760 + AO353_06330 0.52 +1.9
1,410,760 + AO353_06330 0.52 +0.2
1,410,760 + AO353_06330 0.52 +0.1
1,410,760 + AO353_06330 0.52 +1.9
1,410,760 + AO353_06330 0.52 +1.0
1,410,761 - AO353_06330 0.52 +0.9
1,410,761 - AO353_06330 0.52 -1.7
1,410,761 - AO353_06330 0.52 +0.9
1,410,761 - AO353_06330 0.52 +0.2
1,410,868 + AO353_06330 0.68 +0.9
1,410,869 - AO353_06330 0.69 -0.7
1,410,889 + AO353_06330 0.72 -0.1
1,410,889 + AO353_06330 0.72 +2.3
1,410,889 + AO353_06330 0.72 +0.5
1,410,889 + AO353_06330 0.72 +1.2
1,410,889 + AO353_06330 0.72 +0.3
1,410,889 + AO353_06330 0.72 -0.8
1,410,889 + AO353_06330 0.72 +0.2
1,410,889 + AO353_06330 0.72 -1.4
1,410,889 + AO353_06330 0.72 +0.3
1,410,889 + AO353_06330 0.72 +0.3
1,410,889 + AO353_06330 0.72 +0.0
1,410,889 + AO353_06330 0.72 +0.1
1,410,890 - AO353_06330 0.72 -0.4
1,410,890 - AO353_06330 0.72 -0.4
1,410,890 - AO353_06330 0.72 -1.7
1,410,890 - AO353_06330 0.72 +0.3
1,410,890 - AO353_06330 0.72 +1.4
1,410,890 - AO353_06330 0.72 -0.9
1,410,890 - AO353_06330 0.72 -1.3
1,410,890 - AO353_06330 0.72 -0.9
1,410,890 - AO353_06330 0.72 +0.1
1,410,890 - AO353_06330 0.72 -1.4
1,411,086 + +1.3
1,411,086 + +1.1
1,411,086 + -1.1
1,411,087 - -0.8
1,411,087 - -0.1
1,411,108 + -0.3
1,411,108 + +0.0
1,411,108 + -0.7
1,411,108 + -1.2
1,411,109 - +0.2
1,411,109 - +1.8
1,411,109 - +0.1
1,411,124 - +0.8
1,411,263 + +1.1
1,411,263 + -0.7
1,411,263 + +0.1
1,411,263 + -1.5
1,411,263 + -0.1
1,411,263 + -1.2
1,411,263 + -0.3
1,411,263 + -0.4
1,411,263 + -0.5
1,411,264 - +0.9
1,411,264 - +0.4
1,411,264 - +0.7
1,411,264 - +0.3
1,411,264 - +0.4

Or see this region's nucleotide sequence