Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06320 and AO353_06325 are separated by 239 nucleotides AO353_06325 and AO353_06330 overlap by 6 nucleotides AO353_06330 and AO353_06335 are separated by 71 nucleotides
AO353_06320: AO353_06320 - AsnC family transcriptional regulator, at 1,409,506 to 1,409,985
_06320
AO353_06325: AO353_06325 - hypothetical protein, at 1,410,225 to 1,410,434
_06325
AO353_06330: AO353_06330 - pseudouridine synthase, at 1,410,429 to 1,411,070
_06330
AO353_06335: AO353_06335 - AMP nucleosidase, at 1,411,142 to 1,412,605
_06335
Position (kb)
1410
1411 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1409.287 kb on - strand at 1409.386 kb on + strand at 1409.386 kb on + strand at 1409.387 kb on - strand at 1409.387 kb on - strand at 1409.387 kb on - strand at 1409.387 kb on - strand at 1409.387 kb on - strand at 1409.393 kb on - strand at 1409.393 kb on - strand at 1409.483 kb on + strand at 1409.487 kb on + strand at 1409.603 kb on + strand, within AO353_06320 at 1409.650 kb on + strand, within AO353_06320 at 1409.650 kb on + strand, within AO353_06320 at 1409.650 kb on + strand, within AO353_06320 at 1409.650 kb on + strand, within AO353_06320 at 1409.651 kb on - strand, within AO353_06320 at 1409.651 kb on - strand, within AO353_06320 at 1409.710 kb on + strand, within AO353_06320 at 1409.710 kb on + strand, within AO353_06320 at 1409.711 kb on - strand, within AO353_06320 at 1409.711 kb on - strand, within AO353_06320 at 1409.711 kb on - strand, within AO353_06320 at 1409.711 kb on - strand, within AO353_06320 at 1409.827 kb on + strand, within AO353_06320 at 1409.930 kb on + strand, within AO353_06320 at 1409.930 kb on + strand, within AO353_06320 at 1409.931 kb on - strand, within AO353_06320 at 1409.931 kb on - strand, within AO353_06320 at 1409.983 kb on + strand at 1409.983 kb on + strand at 1409.984 kb on - strand at 1409.984 kb on - strand at 1409.984 kb on - strand at 1409.984 kb on - strand at 1409.984 kb on - strand at 1409.984 kb on - strand at 1410.037 kb on + strand at 1410.037 kb on + strand at 1410.037 kb on + strand at 1410.037 kb on + strand at 1410.038 kb on - strand at 1410.038 kb on - strand at 1410.038 kb on - strand at 1410.038 kb on - strand at 1410.038 kb on - strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.049 kb on + strand at 1410.050 kb on + strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.050 kb on - strand at 1410.079 kb on + strand at 1410.127 kb on + strand at 1410.128 kb on - strand at 1410.181 kb on + strand at 1410.181 kb on + strand at 1410.181 kb on + strand at 1410.182 kb on - strand at 1410.182 kb on - strand at 1410.238 kb on + strand at 1410.239 kb on - strand at 1410.239 kb on - strand at 1410.239 kb on - strand at 1410.239 kb on - strand at 1410.269 kb on - strand, within AO353_06325 at 1410.281 kb on + strand, within AO353_06325 at 1410.281 kb on + strand, within AO353_06325 at 1410.281 kb on + strand, within AO353_06325 at 1410.281 kb on + strand, within AO353_06325 at 1410.282 kb on - strand, within AO353_06325 at 1410.282 kb on - strand, within AO353_06325 at 1410.430 kb on + strand at 1410.430 kb on + strand at 1410.430 kb on + strand at 1410.430 kb on + strand at 1410.431 kb on - strand at 1410.431 kb on - strand at 1410.431 kb on - strand at 1410.431 kb on - strand at 1410.431 kb on - strand at 1410.432 kb on + strand at 1410.432 kb on + strand at 1410.432 kb on + strand at 1410.432 kb on + strand at 1410.432 kb on + strand at 1410.433 kb on - strand at 1410.433 kb on - strand at 1410.433 kb on - strand at 1410.433 kb on - strand at 1410.433 kb on - strand at 1410.560 kb on + strand, within AO353_06330 at 1410.639 kb on + strand, within AO353_06330 at 1410.639 kb on + strand, within AO353_06330 at 1410.639 kb on + strand, within AO353_06330 at 1410.639 kb on + strand, within AO353_06330 at 1410.639 kb on + strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.640 kb on - strand, within AO353_06330 at 1410.753 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.760 kb on + strand, within AO353_06330 at 1410.761 kb on - strand, within AO353_06330 at 1410.761 kb on - strand, within AO353_06330 at 1410.761 kb on - strand, within AO353_06330 at 1410.761 kb on - strand, within AO353_06330 at 1410.868 kb on + strand, within AO353_06330 at 1410.869 kb on - strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.889 kb on + strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1410.890 kb on - strand, within AO353_06330 at 1411.086 kb on + strand at 1411.086 kb on + strand at 1411.086 kb on + strand at 1411.087 kb on - strand at 1411.087 kb on - strand at 1411.108 kb on + strand at 1411.108 kb on + strand at 1411.108 kb on + strand at 1411.108 kb on + strand at 1411.109 kb on - strand at 1411.109 kb on - strand at 1411.109 kb on - strand at 1411.124 kb on - strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.263 kb on + strand at 1411.264 kb on - strand at 1411.264 kb on - strand at 1411.264 kb on - strand at 1411.264 kb on - strand at 1411.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,409,287 - -0.5 1,409,386 + +0.2 1,409,386 + -0.7 1,409,387 - +0.3 1,409,387 - +0.5 1,409,387 - -0.8 1,409,387 - +0.3 1,409,387 - +0.9 1,409,393 - +0.6 1,409,393 - -0.8 1,409,483 + -2.0 1,409,487 + -1.4 1,409,603 + AO353_06320 0.20 -1.2 1,409,650 + AO353_06320 0.30 +0.5 1,409,650 + AO353_06320 0.30 +0.7 1,409,650 + AO353_06320 0.30 -0.4 1,409,650 + AO353_06320 0.30 -0.5 1,409,651 - AO353_06320 0.30 +0.8 1,409,651 - AO353_06320 0.30 +1.1 1,409,710 + AO353_06320 0.42 +1.1 1,409,710 + AO353_06320 0.42 -0.2 1,409,711 - AO353_06320 0.43 +0.3 1,409,711 - AO353_06320 0.43 -0.1 1,409,711 - AO353_06320 0.43 -0.4 1,409,711 - AO353_06320 0.43 +0.2 1,409,827 + AO353_06320 0.67 +0.9 1,409,930 + AO353_06320 0.88 -1.5 1,409,930 + AO353_06320 0.88 +1.3 1,409,931 - AO353_06320 0.89 +0.9 1,409,931 - AO353_06320 0.89 -0.3 1,409,983 + -1.1 1,409,983 + +2.3 1,409,984 - -0.5 1,409,984 - +0.4 1,409,984 - -0.2 1,409,984 - -0.0 1,409,984 - -0.5 1,409,984 - +1.1 1,410,037 + -0.1 1,410,037 + -0.7 1,410,037 + -0.6 1,410,037 + +0.1 1,410,038 - -0.4 1,410,038 - -0.3 1,410,038 - -0.7 1,410,038 - -0.4 1,410,038 - -0.6 1,410,049 + -0.9 1,410,049 + +0.2 1,410,049 + -0.4 1,410,049 + -0.9 1,410,049 + -0.9 1,410,049 + +0.1 1,410,049 + -1.3 1,410,049 + +0.9 1,410,049 + +1.2 1,410,049 + -0.3 1,410,049 + -0.8 1,410,049 + -1.2 1,410,049 + -1.0 1,410,049 + -0.1 1,410,049 + -0.3 1,410,049 + +0.5 1,410,049 + -1.9 1,410,049 + -1.4 1,410,049 + +0.2 1,410,049 + -0.1 1,410,049 + -0.3 1,410,050 + +0.5 1,410,050 - +1.1 1,410,050 - -0.7 1,410,050 - -0.9 1,410,050 - -0.1 1,410,050 - +1.8 1,410,050 - +0.3 1,410,050 - +1.7 1,410,050 - -2.0 1,410,050 - +0.5 1,410,050 - +0.5 1,410,050 - +1.0 1,410,050 - +0.2 1,410,079 + -1.2 1,410,127 + -1.1 1,410,128 - +0.5 1,410,181 + +0.2 1,410,181 + -0.6 1,410,181 + +0.5 1,410,182 - +1.3 1,410,182 - -0.6 1,410,238 + +0.9 1,410,239 - -1.1 1,410,239 - +0.0 1,410,239 - +0.9 1,410,239 - +0.3 1,410,269 - AO353_06325 0.21 -1.2 1,410,281 + AO353_06325 0.27 +0.1 1,410,281 + AO353_06325 0.27 -1.5 1,410,281 + AO353_06325 0.27 -0.7 1,410,281 + AO353_06325 0.27 -3.4 1,410,282 - AO353_06325 0.27 -0.3 1,410,282 - AO353_06325 0.27 -1.2 1,410,430 + +1.3 1,410,430 + -1.8 1,410,430 + -0.2 1,410,430 + +1.3 1,410,431 - +0.5 1,410,431 - -1.1 1,410,431 - +0.5 1,410,431 - -0.4 1,410,431 - +0.3 1,410,432 + -0.5 1,410,432 + -1.2 1,410,432 + -0.1 1,410,432 + -0.2 1,410,432 + -0.0 1,410,433 - +0.5 1,410,433 - +0.4 1,410,433 - -0.8 1,410,433 - -0.9 1,410,433 - -0.7 1,410,560 + AO353_06330 0.20 +1.5 1,410,639 + AO353_06330 0.33 +0.5 1,410,639 + AO353_06330 0.33 +0.5 1,410,639 + AO353_06330 0.33 +0.6 1,410,639 + AO353_06330 0.33 -0.7 1,410,639 + AO353_06330 0.33 +0.8 1,410,640 - AO353_06330 0.33 -1.9 1,410,640 - AO353_06330 0.33 +0.2 1,410,640 - AO353_06330 0.33 -0.2 1,410,640 - AO353_06330 0.33 +0.1 1,410,640 - AO353_06330 0.33 +1.5 1,410,640 - AO353_06330 0.33 -0.4 1,410,640 - AO353_06330 0.33 +0.5 1,410,753 + AO353_06330 0.50 +0.4 1,410,760 + AO353_06330 0.52 +0.3 1,410,760 + AO353_06330 0.52 -0.9 1,410,760 + AO353_06330 0.52 -0.5 1,410,760 + AO353_06330 0.52 +2.1 1,410,760 + AO353_06330 0.52 +1.9 1,410,760 + AO353_06330 0.52 +0.2 1,410,760 + AO353_06330 0.52 +0.1 1,410,760 + AO353_06330 0.52 +1.9 1,410,760 + AO353_06330 0.52 +1.0 1,410,761 - AO353_06330 0.52 +0.9 1,410,761 - AO353_06330 0.52 -1.7 1,410,761 - AO353_06330 0.52 +0.9 1,410,761 - AO353_06330 0.52 +0.2 1,410,868 + AO353_06330 0.68 +0.9 1,410,869 - AO353_06330 0.69 -0.7 1,410,889 + AO353_06330 0.72 -0.1 1,410,889 + AO353_06330 0.72 +2.3 1,410,889 + AO353_06330 0.72 +0.5 1,410,889 + AO353_06330 0.72 +1.2 1,410,889 + AO353_06330 0.72 +0.3 1,410,889 + AO353_06330 0.72 -0.8 1,410,889 + AO353_06330 0.72 +0.2 1,410,889 + AO353_06330 0.72 -1.4 1,410,889 + AO353_06330 0.72 +0.3 1,410,889 + AO353_06330 0.72 +0.3 1,410,889 + AO353_06330 0.72 +0.0 1,410,889 + AO353_06330 0.72 +0.1 1,410,890 - AO353_06330 0.72 -0.4 1,410,890 - AO353_06330 0.72 -0.4 1,410,890 - AO353_06330 0.72 -1.7 1,410,890 - AO353_06330 0.72 +0.3 1,410,890 - AO353_06330 0.72 +1.4 1,410,890 - AO353_06330 0.72 -0.9 1,410,890 - AO353_06330 0.72 -1.3 1,410,890 - AO353_06330 0.72 -0.9 1,410,890 - AO353_06330 0.72 +0.1 1,410,890 - AO353_06330 0.72 -1.4 1,411,086 + +1.3 1,411,086 + +1.1 1,411,086 + -1.1 1,411,087 - -0.8 1,411,087 - -0.1 1,411,108 + -0.3 1,411,108 + +0.0 1,411,108 + -0.7 1,411,108 + -1.2 1,411,109 - +0.2 1,411,109 - +1.8 1,411,109 - +0.1 1,411,124 - +0.8 1,411,263 + +1.1 1,411,263 + -0.7 1,411,263 + +0.1 1,411,263 + -1.5 1,411,263 + -0.1 1,411,263 + -1.2 1,411,263 + -0.3 1,411,263 + -0.4 1,411,263 + -0.5 1,411,264 - +0.9 1,411,264 - +0.4 1,411,264 - +0.7 1,411,264 - +0.3 1,411,264 - +0.4
Or see this region's nucleotide sequence