Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03120 and AO353_03125 overlap by 16 nucleotides AO353_03125 and AO353_03130 are separated by 78 nucleotides AO353_03130 and AO353_03135 overlap by 4 nucleotides AO353_03135 and AO353_03140 overlap by 13 nucleotides AO353_03140 and AO353_03145 are separated by 251 nucleotides
AO353_03120: AO353_03120 - hypothetical protein, at 668,154 to 668,693
_03120
AO353_03125: AO353_03125 - LysR family transcriptional regulator, at 668,678 to 669,577
_03125
AO353_03130: AO353_03130 - hypothetical protein, at 669,656 to 670,366
_03130
AO353_03135: AO353_03135 - hypothetical protein, at 670,363 to 670,695
_03135
AO353_03140: AO353_03140 - hypothetical protein, at 670,683 to 671,012
_03140
AO353_03145: AO353_03145 - glycerophosphodiester phosphodiesterase, at 671,264 to 672,391
_03145
Position (kb) 669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 668.717 kb on + strand at 668.718 kb on - strand at 668.718 kb on - strand at 668.718 kb on - strand at 668.794 kb on - strand, within AO353_03125 at 668.883 kb on - strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.912 kb on - strand, within AO353_03125 at 668.912 kb on - strand, within AO353_03125 at 669.043 kb on - strand, within AO353_03125 at 669.043 kb on - strand, within AO353_03125 at 669.236 kb on + strand, within AO353_03125 at 669.236 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.480 kb on - strand, within AO353_03125 at 669.616 kb on + strand at 669.616 kb on + strand at 669.617 kb on - strand at 669.617 kb on - strand at 669.617 kb on - strand at 669.680 kb on - strand at 669.698 kb on + strand at 669.965 kb on + strand, within AO353_03130 at 669.966 kb on - strand, within AO353_03130 at 670.115 kb on + strand, within AO353_03130 at 670.116 kb on - strand, within AO353_03130 at 670.142 kb on + strand, within AO353_03130 at 670.233 kb on + strand, within AO353_03130 at 670.234 kb on - strand, within AO353_03130 at 670.234 kb on - strand, within AO353_03130 at 670.234 kb on - strand, within AO353_03130 at 670.391 kb on - strand at 670.393 kb on + strand at 670.393 kb on + strand at 670.394 kb on - strand at 670.394 kb on - strand at 670.394 kb on - strand at 670.394 kb on - strand at 670.401 kb on - strand, within AO353_03135 at 670.438 kb on + strand, within AO353_03135 at 670.543 kb on + strand, within AO353_03135 at 670.543 kb on + strand, within AO353_03135 at 670.544 kb on - strand, within AO353_03135 at 670.627 kb on + strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.628 kb on - strand, within AO353_03135 at 670.669 kb on + strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.742 kb on + strand, within AO353_03140 at 670.742 kb on + strand, within AO353_03140 at 670.742 kb on + strand, within AO353_03140 at 670.742 kb on + strand, within AO353_03140 at 670.743 kb on - strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.744 kb on + strand, within AO353_03140 at 670.745 kb on - strand, within AO353_03140 at 670.745 kb on - strand, within AO353_03140 at 670.745 kb on - strand, within AO353_03140 at 670.930 kb on + strand, within AO353_03140 at 670.931 kb on - strand, within AO353_03140 at 670.991 kb on + strand at 670.991 kb on + strand at 670.991 kb on + strand at 670.992 kb on - strand at 670.992 kb on - strand at 670.992 kb on - strand at 670.992 kb on - strand at 670.992 kb on - strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.015 kb on + strand at 671.016 kb on - strand at 671.058 kb on + strand at 671.058 kb on + strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.059 kb on - strand at 671.129 kb on - strand at 671.178 kb on + strand at 671.179 kb on - strand at 671.218 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.225 kb on + strand at 671.226 kb on - strand at 671.226 kb on - strand at 671.226 kb on - strand at 671.226 kb on - strand at 671.272 kb on + strand at 671.273 kb on - strand at 671.273 kb on - strand at 671.276 kb on + strand at 671.276 kb on + strand at 671.277 kb on - strand at 671.277 kb on - strand at 671.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 668,717 + +1.2 668,718 - -0.9 668,718 - +1.2 668,718 - +0.1 668,794 - AO353_03125 0.13 -0.3 668,883 - AO353_03125 0.23 -0.3 668,911 + AO353_03125 0.26 -1.4 668,911 + AO353_03125 0.26 +0.0 668,911 + AO353_03125 0.26 -1.3 668,912 - AO353_03125 0.26 -0.6 668,912 - AO353_03125 0.26 -0.5 669,043 - AO353_03125 0.41 +1.6 669,043 - AO353_03125 0.41 +0.4 669,236 + AO353_03125 0.62 +0.6 669,236 + AO353_03125 0.62 -0.4 669,387 + AO353_03125 0.79 -0.4 669,387 + AO353_03125 0.79 +1.2 669,387 + AO353_03125 0.79 +1.5 669,387 + AO353_03125 0.79 -0.3 669,388 - AO353_03125 0.79 +0.6 669,388 - AO353_03125 0.79 -0.0 669,388 - AO353_03125 0.79 -0.8 669,480 - AO353_03125 0.89 +0.2 669,616 + +0.9 669,616 + +0.9 669,617 - -0.1 669,617 - +0.8 669,617 - -0.2 669,680 - +0.2 669,698 + +0.9 669,965 + AO353_03130 0.43 +0.5 669,966 - AO353_03130 0.44 -0.2 670,115 + AO353_03130 0.65 -0.2 670,116 - AO353_03130 0.65 +0.1 670,142 + AO353_03130 0.68 -0.4 670,233 + AO353_03130 0.81 -1.1 670,234 - AO353_03130 0.81 -0.9 670,234 - AO353_03130 0.81 -1.4 670,234 - AO353_03130 0.81 -0.4 670,391 - +0.1 670,393 + -0.3 670,393 + -0.2 670,394 - +1.1 670,394 - +0.0 670,394 - -0.9 670,394 - +0.3 670,401 - AO353_03135 0.11 -2.4 670,438 + AO353_03135 0.23 +1.4 670,543 + AO353_03135 0.54 -1.1 670,543 + AO353_03135 0.54 +0.6 670,544 - AO353_03135 0.54 +1.1 670,627 + AO353_03135 0.79 -1.5 670,628 - AO353_03135 0.80 -0.5 670,628 - AO353_03135 0.80 -0.1 670,628 - AO353_03135 0.80 +0.2 670,628 - AO353_03135 0.80 +2.5 670,628 - AO353_03135 0.80 +1.6 670,669 + +0.6 670,670 - -0.4 670,670 - -1.2 670,670 - -1.2 670,670 - +0.6 670,670 - -1.1 670,742 + AO353_03140 0.18 -1.4 670,742 + AO353_03140 0.18 -0.4 670,742 + AO353_03140 0.18 +0.6 670,742 + AO353_03140 0.18 +0.9 670,743 - AO353_03140 0.18 -1.7 670,744 + AO353_03140 0.18 +0.8 670,744 + AO353_03140 0.18 +1.2 670,744 + AO353_03140 0.18 +0.1 670,744 + AO353_03140 0.18 +0.9 670,745 - AO353_03140 0.19 +1.6 670,745 - AO353_03140 0.19 +1.1 670,745 - AO353_03140 0.19 +0.4 670,930 + AO353_03140 0.75 -0.7 670,931 - AO353_03140 0.75 -0.8 670,991 + +0.7 670,991 + +1.1 670,991 + +0.1 670,992 - -0.9 670,992 - +0.9 670,992 - +0.7 670,992 - +0.4 670,992 - -0.6 671,015 + -0.5 671,015 + +0.4 671,015 + +2.1 671,015 + +0.5 671,015 + -0.4 671,016 - +0.9 671,058 + +1.9 671,058 + +0.9 671,059 - -0.4 671,059 - +0.9 671,059 - +0.7 671,059 - -0.5 671,059 - -1.7 671,129 - +1.4 671,178 + -0.4 671,179 - +0.3 671,218 + +0.2 671,225 + -0.7 671,225 + -1.7 671,225 + +0.1 671,225 + -0.8 671,225 + -2.1 671,226 - +0.5 671,226 - -0.4 671,226 - -0.9 671,226 - -0.7 671,272 + +0.2 671,273 - +0.3 671,273 - +0.3 671,276 + -0.4 671,276 + -0.4 671,277 - +0.4 671,277 - +0.4 671,277 - +2.0
Or see this region's nucleotide sequence