Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01275

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01270 and AO353_01275 are separated by 297 nucleotidesAO353_01275 and AO353_01280 are separated by 209 nucleotides AO353_01270: AO353_01270 - 2-dehydro-3-deoxygalactonokinase, at 277,799 to 278,794 _01270 AO353_01275: AO353_01275 - hypothetical protein, at 279,092 to 279,391 _01275 AO353_01280: AO353_01280 - hypothetical protein, at 279,601 to 280,095 _01280 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 278.440 kb on + strand, within AO353_01270at 278.440 kb on + strand, within AO353_01270at 278.520 kb on + strand, within AO353_01270at 278.521 kb on - strand, within AO353_01270at 278.742 kb on + strandat 278.742 kb on + strandat 278.835 kb on + strandat 278.835 kb on + strandat 278.835 kb on + strandat 278.835 kb on + strandat 278.836 kb on - strandat 278.836 kb on - strandat 278.836 kb on - strandat 278.836 kb on - strandat 278.837 kb on + strandat 278.838 kb on - strandat 279.040 kb on - strandat 279.093 kb on + strandat 279.103 kb on + strandat 279.117 kb on - strandat 279.139 kb on + strandat 279.140 kb on - strand, within AO353_01275at 279.154 kb on - strand, within AO353_01275at 279.154 kb on - strand, within AO353_01275at 279.196 kb on + strand, within AO353_01275at 279.198 kb on + strand, within AO353_01275at 279.229 kb on + strand, within AO353_01275at 279.243 kb on + strand, within AO353_01275at 279.243 kb on + strand, within AO353_01275at 279.243 kb on + strand, within AO353_01275at 279.244 kb on - strand, within AO353_01275at 279.352 kb on + strand, within AO353_01275at 279.353 kb on - strand, within AO353_01275at 279.482 kb on - strandat 279.501 kb on - strandat 279.501 kb on - strandat 279.501 kb on - strandat 279.501 kb on - strandat 279.505 kb on - strandat 279.505 kb on - strandat 279.633 kb on + strandat 279.634 kb on - strandat 279.634 kb on - strandat 279.637 kb on + strandat 279.637 kb on + strandat 279.637 kb on + strandat 279.638 kb on - strandat 279.638 kb on - strandat 279.638 kb on - strandat 279.638 kb on - strandat 279.660 kb on - strand, within AO353_01280at 279.667 kb on - strand, within AO353_01280at 279.667 kb on - strand, within AO353_01280at 279.668 kb on + strand, within AO353_01280at 279.669 kb on - strand, within AO353_01280at 279.669 kb on - strand, within AO353_01280at 279.669 kb on - strand, within AO353_01280at 279.672 kb on + strand, within AO353_01280at 279.672 kb on + strand, within AO353_01280at 279.673 kb on - strand, within AO353_01280at 279.673 kb on - strand, within AO353_01280at 279.678 kb on + strand, within AO353_01280at 279.803 kb on + strand, within AO353_01280at 279.803 kb on + strand, within AO353_01280at 279.803 kb on + strand, within AO353_01280at 279.804 kb on - strand, within AO353_01280at 279.830 kb on + strand, within AO353_01280at 279.830 kb on + strand, within AO353_01280at 279.831 kb on - strand, within AO353_01280at 279.831 kb on - strand, within AO353_01280at 279.940 kb on + strand, within AO353_01280at 279.941 kb on - strand, within AO353_01280at 279.994 kb on - strand, within AO353_01280at 280.041 kb on + strand, within AO353_01280at 280.072 kb on + strandat 280.073 kb on - strandat 280.073 kb on - strandat 280.099 kb on + strandat 280.115 kb on - strandat 280.216 kb on + strandat 280.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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278,440 + AO353_01270 0.64 +0.7
278,440 + AO353_01270 0.64 +0.9
278,520 + AO353_01270 0.72 -0.8
278,521 - AO353_01270 0.72 -0.8
278,742 + +0.4
278,742 + +1.3
278,835 + +1.3
278,835 + -1.1
278,835 + +0.1
278,835 + -0.1
278,836 - +0.4
278,836 - +0.9
278,836 - +0.8
278,836 - +1.0
278,837 + -0.5
278,838 - -0.9
279,040 - +0.3
279,093 + +0.1
279,103 + -0.3
279,117 - -0.8
279,139 + +0.5
279,140 - AO353_01275 0.16 -1.0
279,154 - AO353_01275 0.21 -0.6
279,154 - AO353_01275 0.21 -0.8
279,196 + AO353_01275 0.35 +1.9
279,198 + AO353_01275 0.35 -0.7
279,229 + AO353_01275 0.46 -1.4
279,243 + AO353_01275 0.50 -1.1
279,243 + AO353_01275 0.50 -1.6
279,243 + AO353_01275 0.50 -0.1
279,244 - AO353_01275 0.51 -0.3
279,352 + AO353_01275 0.87 -0.4
279,353 - AO353_01275 0.87 +0.1
279,482 - +1.2
279,501 - +1.5
279,501 - +0.9
279,501 - -0.7
279,501 - -1.0
279,505 - +0.8
279,505 - +0.5
279,633 + -1.3
279,634 - +0.3
279,634 - +0.6
279,637 + -0.3
279,637 + -2.9
279,637 + -0.2
279,638 - -0.6
279,638 - +1.5
279,638 - +0.4
279,638 - +0.5
279,660 - AO353_01280 0.12 +0.5
279,667 - AO353_01280 0.13 +1.5
279,667 - AO353_01280 0.13 -2.9
279,668 + AO353_01280 0.14 -1.5
279,669 - AO353_01280 0.14 +0.8
279,669 - AO353_01280 0.14 +1.1
279,669 - AO353_01280 0.14 -0.9
279,672 + AO353_01280 0.14 -2.1
279,672 + AO353_01280 0.14 -0.2
279,673 - AO353_01280 0.15 -0.5
279,673 - AO353_01280 0.15 -0.5
279,678 + AO353_01280 0.16 -0.4
279,803 + AO353_01280 0.41 -0.3
279,803 + AO353_01280 0.41 -0.3
279,803 + AO353_01280 0.41 +0.5
279,804 - AO353_01280 0.41 -0.6
279,830 + AO353_01280 0.46 -0.3
279,830 + AO353_01280 0.46 +0.8
279,831 - AO353_01280 0.46 +0.3
279,831 - AO353_01280 0.46 -0.7
279,940 + AO353_01280 0.68 -0.2
279,941 - AO353_01280 0.69 +0.2
279,994 - AO353_01280 0.79 +0.2
280,041 + AO353_01280 0.89 +1.5
280,072 + -1.5
280,073 - -1.0
280,073 - -0.8
280,099 + +0.2
280,115 - +0.2
280,216 + +0.0
280,268 + +0.9

Or see this region's nucleotide sequence