Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11170

Experiment: Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11160 and ABZR86_RS11165 are separated by 0 nucleotidesABZR86_RS11165 and ABZR86_RS11170 overlap by 4 nucleotidesABZR86_RS11170 and ABZR86_RS11175 are separated by 545 nucleotides ABZR86_RS11160: ABZR86_RS11160 - glycosyltransferase, at 2,489,086 to 2,491,272 _RS11160 ABZR86_RS11165: ABZR86_RS11165 - class I SAM-dependent methyltransferase, at 2,491,273 to 2,492,028 _RS11165 ABZR86_RS11170: ABZR86_RS11170 - radical SAM protein, at 2,492,025 to 2,493,485 _RS11170 ABZR86_RS11175: ABZR86_RS11175 - hypothetical protein, at 2,494,031 to 2,494,309 _RS11175 Position (kb) 2492 2493 2494Strain fitness (log2 ratio) -2 -1 0 1at 2491.270 kb on + strandat 2491.291 kb on + strandat 2491.292 kb on - strandat 2491.312 kb on + strandat 2491.313 kb on - strandat 2491.313 kb on - strandat 2491.360 kb on + strand, within ABZR86_RS11165at 2491.360 kb on + strand, within ABZR86_RS11165at 2491.360 kb on + strand, within ABZR86_RS11165at 2491.597 kb on + strand, within ABZR86_RS11165at 2491.612 kb on + strand, within ABZR86_RS11165at 2491.612 kb on + strand, within ABZR86_RS11165at 2491.613 kb on - strand, within ABZR86_RS11165at 2491.832 kb on - strand, within ABZR86_RS11165at 2491.898 kb on - strand, within ABZR86_RS11165at 2492.030 kb on + strandat 2492.347 kb on + strand, within ABZR86_RS11170at 2492.347 kb on + strand, within ABZR86_RS11170at 2492.461 kb on - strand, within ABZR86_RS11170at 2493.027 kb on + strand, within ABZR86_RS11170at 2493.027 kb on + strand, within ABZR86_RS11170at 2493.066 kb on + strand, within ABZR86_RS11170at 2493.360 kb on - strandat 2493.555 kb on - strandat 2493.555 kb on - strandat 2493.640 kb on + strandat 2493.681 kb on + strandat 2493.682 kb on - strandat 2493.682 kb on - strandat 2493.767 kb on + strandat 2493.809 kb on - strandat 2493.809 kb on - strandat 2493.894 kb on + strandat 2493.894 kb on + strandat 2493.894 kb on + strandat 2493.894 kb on + strandat 2493.894 kb on + strandat 2493.936 kb on + strandat 2494.023 kb on + strandat 2494.023 kb on + strandat 2494.309 kb on + strandat 2494.309 kb on + strandat 2494.366 kb on - strandat 2494.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 250 mM
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2,491,270 + -0.7
2,491,291 + +1.5
2,491,292 - -0.6
2,491,312 + -0.1
2,491,313 - +0.2
2,491,313 - +0.4
2,491,360 + ABZR86_RS11165 0.12 -1.3
2,491,360 + ABZR86_RS11165 0.12 +0.6
2,491,360 + ABZR86_RS11165 0.12 +0.6
2,491,597 + ABZR86_RS11165 0.43 +0.0
2,491,612 + ABZR86_RS11165 0.45 -0.3
2,491,612 + ABZR86_RS11165 0.45 +0.7
2,491,613 - ABZR86_RS11165 0.45 +1.2
2,491,832 - ABZR86_RS11165 0.74 -0.4
2,491,898 - ABZR86_RS11165 0.83 +0.7
2,492,030 + -2.0
2,492,347 + ABZR86_RS11170 0.22 -0.4
2,492,347 + ABZR86_RS11170 0.22 +0.3
2,492,461 - ABZR86_RS11170 0.30 -0.3
2,493,027 + ABZR86_RS11170 0.69 +1.0
2,493,027 + ABZR86_RS11170 0.69 -1.5
2,493,066 + ABZR86_RS11170 0.71 +0.0
2,493,360 - +0.4
2,493,555 - -0.3
2,493,555 - +0.2
2,493,640 + +0.6
2,493,681 + -0.3
2,493,682 - +1.4
2,493,682 - +0.3
2,493,767 + -0.0
2,493,809 - -0.4
2,493,809 - +0.1
2,493,894 + +0.1
2,493,894 + +0.5
2,493,894 + -0.6
2,493,894 + +0.3
2,493,894 + -0.0
2,493,936 + -0.2
2,494,023 + -0.7
2,494,023 + -0.7
2,494,309 + +0.1
2,494,309 + +0.2
2,494,366 - -0.9
2,494,458 - -0.2

Or see this region's nucleotide sequence