Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09205

Experiment: Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09195 and ABZR86_RS09200 are separated by 33 nucleotidesABZR86_RS09200 and ABZR86_RS09205 are separated by 37 nucleotidesABZR86_RS09205 and ABZR86_RS09210 overlap by 4 nucleotidesABZR86_RS09210 and ABZR86_RS09215 are separated by 240 nucleotides ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165 _RS09195 ABZR86_RS09200: ABZR86_RS09200 - PilX N-terminal domain-containing pilus assembly protein, at 2,048,199 to 2,048,864 _RS09200 ABZR86_RS09205: ABZR86_RS09205 - PilW family protein, at 2,048,902 to 2,050,296 _RS09205 ABZR86_RS09210: ABZR86_RS09210 - type IV pilus modification protein PilV, at 2,050,293 to 2,050,889 _RS09210 ABZR86_RS09215: ABZR86_RS09215 - GspH/FimT family pseudopilin, at 2,051,130 to 2,051,717 _RS09215 Position (kb) 2048 2049 2050 2051Strain fitness (log2 ratio) -1 0 1at 2047.937 kb on + strandat 2047.938 kb on - strandat 2048.159 kb on + strandat 2048.160 kb on - strandat 2048.186 kb on - strandat 2048.281 kb on + strand, within ABZR86_RS09200at 2048.395 kb on + strand, within ABZR86_RS09200at 2048.396 kb on - strand, within ABZR86_RS09200at 2048.476 kb on + strand, within ABZR86_RS09200at 2048.477 kb on - strand, within ABZR86_RS09200at 2048.546 kb on - strand, within ABZR86_RS09200at 2048.556 kb on - strand, within ABZR86_RS09200at 2048.857 kb on + strandat 2048.857 kb on + strandat 2048.857 kb on + strandat 2048.858 kb on - strandat 2048.858 kb on - strandat 2048.878 kb on + strandat 2048.878 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.036 kb on - strandat 2049.036 kb on - strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.068 kb on + strand, within ABZR86_RS09205at 2049.068 kb on + strand, within ABZR86_RS09205at 2049.069 kb on - strand, within ABZR86_RS09205at 2049.069 kb on - strand, within ABZR86_RS09205at 2049.212 kb on + strand, within ABZR86_RS09205at 2049.212 kb on + strand, within ABZR86_RS09205at 2049.212 kb on + strand, within ABZR86_RS09205at 2049.213 kb on - strand, within ABZR86_RS09205at 2049.213 kb on - strand, within ABZR86_RS09205at 2049.213 kb on - strand, within ABZR86_RS09205at 2049.401 kb on + strand, within ABZR86_RS09205at 2049.402 kb on - strand, within ABZR86_RS09205at 2049.484 kb on - strand, within ABZR86_RS09205at 2049.484 kb on - strand, within ABZR86_RS09205at 2049.716 kb on + strand, within ABZR86_RS09205at 2049.869 kb on + strand, within ABZR86_RS09205at 2049.869 kb on + strand, within ABZR86_RS09205at 2049.869 kb on + strand, within ABZR86_RS09205at 2049.869 kb on + strand, within ABZR86_RS09205at 2049.870 kb on - strand, within ABZR86_RS09205at 2049.870 kb on - strand, within ABZR86_RS09205at 2049.884 kb on + strand, within ABZR86_RS09205at 2049.884 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.912 kb on + strand, within ABZR86_RS09205at 2049.913 kb on - strand, within ABZR86_RS09205at 2049.913 kb on - strand, within ABZR86_RS09205at 2049.913 kb on - strand, within ABZR86_RS09205at 2049.913 kb on - strand, within ABZR86_RS09205at 2049.913 kb on - strand, within ABZR86_RS09205at 2049.981 kb on - strand, within ABZR86_RS09205at 2050.011 kb on - strand, within ABZR86_RS09205at 2050.061 kb on + strand, within ABZR86_RS09205at 2050.386 kb on - strand, within ABZR86_RS09210at 2050.386 kb on - strand, within ABZR86_RS09210at 2050.386 kb on - strand, within ABZR86_RS09210at 2050.386 kb on - strand, within ABZR86_RS09210at 2050.675 kb on + strand, within ABZR86_RS09210at 2050.676 kb on - strand, within ABZR86_RS09210at 2050.676 kb on - strand, within ABZR86_RS09210at 2050.916 kb on + strandat 2050.917 kb on - strandat 2050.935 kb on + strandat 2050.942 kb on + strandat 2050.943 kb on - strandat 2051.011 kb on - strandat 2051.045 kb on - strandat 2051.168 kb on + strandat 2051.169 kb on - strandat 2051.228 kb on + strand, within ABZR86_RS09215

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 250 mM
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2,047,937 + +0.0
2,047,938 - -0.6
2,048,159 + -0.3
2,048,160 - +0.4
2,048,186 - -0.1
2,048,281 + ABZR86_RS09200 0.12 +0.3
2,048,395 + ABZR86_RS09200 0.29 -0.8
2,048,396 - ABZR86_RS09200 0.30 +0.1
2,048,476 + ABZR86_RS09200 0.42 -0.2
2,048,477 - ABZR86_RS09200 0.42 +0.3
2,048,546 - ABZR86_RS09200 0.52 +0.4
2,048,556 - ABZR86_RS09200 0.54 +0.6
2,048,857 + -0.3
2,048,857 + -0.4
2,048,857 + -0.5
2,048,858 - -0.8
2,048,858 - +0.5
2,048,878 + -0.0
2,048,878 + -0.1
2,049,035 + +0.6
2,049,035 + -0.5
2,049,035 + +0.6
2,049,035 + +0.2
2,049,035 + +0.5
2,049,036 - +0.1
2,049,036 - +0.3
2,049,041 + -0.5
2,049,041 + -0.7
2,049,041 + -0.3
2,049,041 + +0.6
2,049,068 + ABZR86_RS09205 0.12 -0.3
2,049,068 + ABZR86_RS09205 0.12 -0.2
2,049,069 - ABZR86_RS09205 0.12 +0.2
2,049,069 - ABZR86_RS09205 0.12 +0.3
2,049,212 + ABZR86_RS09205 0.22 -0.0
2,049,212 + ABZR86_RS09205 0.22 +0.0
2,049,212 + ABZR86_RS09205 0.22 -0.1
2,049,213 - ABZR86_RS09205 0.22 -0.6
2,049,213 - ABZR86_RS09205 0.22 +0.2
2,049,213 - ABZR86_RS09205 0.22 -0.3
2,049,401 + ABZR86_RS09205 0.36 +1.4
2,049,402 - ABZR86_RS09205 0.36 -0.2
2,049,484 - ABZR86_RS09205 0.42 -0.1
2,049,484 - ABZR86_RS09205 0.42 +0.6
2,049,716 + ABZR86_RS09205 0.58 -0.9
2,049,869 + ABZR86_RS09205 0.69 +0.3
2,049,869 + ABZR86_RS09205 0.69 +0.9
2,049,869 + ABZR86_RS09205 0.69 +0.5
2,049,869 + ABZR86_RS09205 0.69 -0.6
2,049,870 - ABZR86_RS09205 0.69 +0.4
2,049,870 - ABZR86_RS09205 0.69 -0.1
2,049,884 + ABZR86_RS09205 0.70 +0.6
2,049,884 + ABZR86_RS09205 0.70 -0.1
2,049,912 + ABZR86_RS09205 0.72 +0.0
2,049,912 + ABZR86_RS09205 0.72 -0.2
2,049,912 + ABZR86_RS09205 0.72 -0.2
2,049,912 + ABZR86_RS09205 0.72 -1.1
2,049,912 + ABZR86_RS09205 0.72 +0.3
2,049,912 + ABZR86_RS09205 0.72 -1.6
2,049,912 + ABZR86_RS09205 0.72 -0.2
2,049,912 + ABZR86_RS09205 0.72 +0.0
2,049,912 + ABZR86_RS09205 0.72 +1.0
2,049,913 - ABZR86_RS09205 0.72 -0.7
2,049,913 - ABZR86_RS09205 0.72 +0.7
2,049,913 - ABZR86_RS09205 0.72 +0.1
2,049,913 - ABZR86_RS09205 0.72 -1.3
2,049,913 - ABZR86_RS09205 0.72 -0.4
2,049,981 - ABZR86_RS09205 0.77 +0.3
2,050,011 - ABZR86_RS09205 0.79 +0.4
2,050,061 + ABZR86_RS09205 0.83 +0.4
2,050,386 - ABZR86_RS09210 0.16 +0.2
2,050,386 - ABZR86_RS09210 0.16 -0.0
2,050,386 - ABZR86_RS09210 0.16 -0.3
2,050,386 - ABZR86_RS09210 0.16 -0.3
2,050,675 + ABZR86_RS09210 0.64 +0.8
2,050,676 - ABZR86_RS09210 0.64 +0.2
2,050,676 - ABZR86_RS09210 0.64 -0.2
2,050,916 + -0.2
2,050,917 - -1.5
2,050,935 + -0.4
2,050,942 + +0.3
2,050,943 - +1.1
2,051,011 - +0.1
2,051,045 - -0.3
2,051,168 + +0.3
2,051,169 - +0.4
2,051,228 + ABZR86_RS09215 0.17 -0.7

Or see this region's nucleotide sequence