Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03965

Experiment: Chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03960 and ABZR86_RS03965 are separated by 185 nucleotidesABZR86_RS03965 and ABZR86_RS03970 are separated by 59 nucleotides ABZR86_RS03960: ABZR86_RS03960 - ribonuclease H-like domain-containing protein, at 868,325 to 869,149 _RS03960 ABZR86_RS03965: ABZR86_RS03965 - sterol desaturase family protein, at 869,335 to 870,351 _RS03965 ABZR86_RS03970: ABZR86_RS03970 - sugar-binding domain-containing protein, at 870,411 to 872,279 _RS03970 Position (kb) 869 870 871Strain fitness (log2 ratio) -1 0 1at 868.372 kb on + strandat 868.372 kb on + strandat 868.373 kb on - strandat 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.811 kb on + strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.812 kb on - strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.826 kb on + strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.827 kb on - strand, within ABZR86_RS03960at 868.897 kb on + strand, within ABZR86_RS03960at 868.897 kb on + strand, within ABZR86_RS03960at 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.147 kb on + strandat 869.148 kb on - strandat 869.229 kb on + strandat 869.229 kb on + strandat 869.229 kb on + strandat 869.299 kb on + strandat 869.536 kb on + strand, within ABZR86_RS03965at 869.589 kb on + strand, within ABZR86_RS03965at 869.589 kb on + strand, within ABZR86_RS03965at 869.590 kb on - strand, within ABZR86_RS03965at 869.590 kb on - strand, within ABZR86_RS03965at 869.675 kb on - strand, within ABZR86_RS03965at 869.680 kb on + strand, within ABZR86_RS03965at 869.710 kb on + strand, within ABZR86_RS03965at 869.711 kb on - strand, within ABZR86_RS03965at 869.797 kb on + strand, within ABZR86_RS03965at 869.797 kb on + strand, within ABZR86_RS03965at 869.797 kb on + strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.798 kb on - strand, within ABZR86_RS03965at 869.824 kb on + strand, within ABZR86_RS03965at 869.825 kb on - strand, within ABZR86_RS03965at 870.028 kb on + strand, within ABZR86_RS03965at 870.028 kb on + strand, within ABZR86_RS03965at 870.029 kb on - strand, within ABZR86_RS03965at 870.029 kb on - strand, within ABZR86_RS03965at 870.085 kb on + strand, within ABZR86_RS03965at 870.085 kb on + strand, within ABZR86_RS03965at 870.085 kb on + strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.086 kb on - strand, within ABZR86_RS03965at 870.107 kb on + strand, within ABZR86_RS03965at 870.107 kb on + strand, within ABZR86_RS03965at 870.119 kb on - strand, within ABZR86_RS03965at 870.163 kb on + strand, within ABZR86_RS03965at 870.163 kb on + strand, within ABZR86_RS03965at 870.163 kb on + strand, within ABZR86_RS03965at 870.198 kb on - strand, within ABZR86_RS03965at 870.198 kb on - strand, within ABZR86_RS03965at 870.232 kb on + strand, within ABZR86_RS03965at 870.233 kb on - strand, within ABZR86_RS03965at 870.233 kb on - strand, within ABZR86_RS03965at 870.277 kb on - strandat 870.389 kb on + strandat 870.389 kb on + strandat 870.390 kb on - strandat 870.390 kb on - strandat 870.390 kb on - strandat 870.652 kb on + strand, within ABZR86_RS03970at 870.653 kb on - strand, within ABZR86_RS03970at 870.660 kb on + strand, within ABZR86_RS03970at 870.774 kb on + strand, within ABZR86_RS03970at 870.774 kb on + strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.775 kb on - strand, within ABZR86_RS03970at 870.784 kb on - strand, within ABZR86_RS03970at 870.784 kb on - strand, within ABZR86_RS03970at 870.784 kb on - strand, within ABZR86_RS03970at 870.876 kb on + strand, within ABZR86_RS03970at 870.876 kb on + strand, within ABZR86_RS03970at 870.877 kb on - strand, within ABZR86_RS03970at 870.877 kb on - strand, within ABZR86_RS03970at 870.877 kb on - strand, within ABZR86_RS03970at 870.877 kb on - strand, within ABZR86_RS03970at 870.877 kb on - strand, within ABZR86_RS03970at 870.877 kb on - strand, within ABZR86_RS03970at 870.916 kb on - strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.917 kb on + strand, within ABZR86_RS03970at 870.918 kb on - strand, within ABZR86_RS03970at 870.918 kb on - strand, within ABZR86_RS03970at 871.053 kb on + strand, within ABZR86_RS03970at 871.053 kb on + strand, within ABZR86_RS03970at 871.053 kb on + strand, within ABZR86_RS03970at 871.053 kb on + strand, within ABZR86_RS03970at 871.053 kb on + strand, within ABZR86_RS03970at 871.054 kb on - strand, within ABZR86_RS03970at 871.054 kb on - strand, within ABZR86_RS03970at 871.055 kb on + strand, within ABZR86_RS03970at 871.056 kb on - strand, within ABZR86_RS03970at 871.056 kb on - strand, within ABZR86_RS03970at 871.084 kb on + strand, within ABZR86_RS03970at 871.131 kb on - strand, within ABZR86_RS03970at 871.131 kb on - strand, within ABZR86_RS03970at 871.131 kb on - strand, within ABZR86_RS03970at 871.215 kb on + strand, within ABZR86_RS03970at 871.321 kb on - strand, within ABZR86_RS03970at 871.321 kb on - strand, within ABZR86_RS03970at 871.321 kb on - strand, within ABZR86_RS03970

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 250 mM
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868,372 + +0.3
868,372 + +0.6
868,373 - -0.3
868,811 + ABZR86_RS03960 0.59 +0.0
868,811 + ABZR86_RS03960 0.59 -0.4
868,811 + ABZR86_RS03960 0.59 +0.1
868,811 + ABZR86_RS03960 0.59 -0.8
868,811 + ABZR86_RS03960 0.59 -0.7
868,812 - ABZR86_RS03960 0.59 +0.4
868,812 - ABZR86_RS03960 0.59 -0.1
868,812 - ABZR86_RS03960 0.59 -0.6
868,826 + ABZR86_RS03960 0.61 -0.2
868,826 + ABZR86_RS03960 0.61 -0.8
868,826 + ABZR86_RS03960 0.61 -0.1
868,827 - ABZR86_RS03960 0.61 -0.3
868,827 - ABZR86_RS03960 0.61 +0.1
868,827 - ABZR86_RS03960 0.61 +0.1
868,827 - ABZR86_RS03960 0.61 -0.6
868,827 - ABZR86_RS03960 0.61 +0.4
868,897 + ABZR86_RS03960 0.69 -1.2
868,897 + ABZR86_RS03960 0.69 +0.4
869,147 + +0.4
869,147 + +0.4
869,147 + -0.6
869,147 + +0.2
869,147 + +0.1
869,148 - -0.6
869,229 + +0.2
869,229 + -0.1
869,229 + -0.4
869,299 + -0.1
869,536 + ABZR86_RS03965 0.20 +0.3
869,589 + ABZR86_RS03965 0.25 -0.2
869,589 + ABZR86_RS03965 0.25 +0.3
869,590 - ABZR86_RS03965 0.25 -0.3
869,590 - ABZR86_RS03965 0.25 -0.8
869,675 - ABZR86_RS03965 0.33 -0.6
869,680 + ABZR86_RS03965 0.34 +0.4
869,710 + ABZR86_RS03965 0.37 -0.2
869,711 - ABZR86_RS03965 0.37 +0.1
869,797 + ABZR86_RS03965 0.45 -0.4
869,797 + ABZR86_RS03965 0.45 +0.3
869,797 + ABZR86_RS03965 0.45 +0.9
869,798 - ABZR86_RS03965 0.46 -0.3
869,798 - ABZR86_RS03965 0.46 -0.2
869,798 - ABZR86_RS03965 0.46 -0.2
869,798 - ABZR86_RS03965 0.46 +0.5
869,798 - ABZR86_RS03965 0.46 -0.8
869,824 + ABZR86_RS03965 0.48 -0.6
869,825 - ABZR86_RS03965 0.48 +0.1
870,028 + ABZR86_RS03965 0.68 +0.5
870,028 + ABZR86_RS03965 0.68 -0.9
870,029 - ABZR86_RS03965 0.68 -0.1
870,029 - ABZR86_RS03965 0.68 +0.9
870,085 + ABZR86_RS03965 0.74 -0.0
870,085 + ABZR86_RS03965 0.74 -0.5
870,085 + ABZR86_RS03965 0.74 +0.1
870,086 - ABZR86_RS03965 0.74 -0.1
870,086 - ABZR86_RS03965 0.74 -0.9
870,086 - ABZR86_RS03965 0.74 +1.2
870,086 - ABZR86_RS03965 0.74 -0.1
870,086 - ABZR86_RS03965 0.74 +0.3
870,086 - ABZR86_RS03965 0.74 -0.6
870,086 - ABZR86_RS03965 0.74 -0.3
870,107 + ABZR86_RS03965 0.76 +0.0
870,107 + ABZR86_RS03965 0.76 +0.1
870,119 - ABZR86_RS03965 0.77 +0.5
870,163 + ABZR86_RS03965 0.81 +0.4
870,163 + ABZR86_RS03965 0.81 +0.0
870,163 + ABZR86_RS03965 0.81 +0.2
870,198 - ABZR86_RS03965 0.85 -1.2
870,198 - ABZR86_RS03965 0.85 -0.6
870,232 + ABZR86_RS03965 0.88 +0.7
870,233 - ABZR86_RS03965 0.88 +0.3
870,233 - ABZR86_RS03965 0.88 -0.3
870,277 - +0.3
870,389 + -0.3
870,389 + -0.5
870,390 - -0.2
870,390 - -0.0
870,390 - -0.4
870,652 + ABZR86_RS03970 0.13 +0.1
870,653 - ABZR86_RS03970 0.13 -0.1
870,660 + ABZR86_RS03970 0.13 +0.3
870,774 + ABZR86_RS03970 0.19 +0.4
870,774 + ABZR86_RS03970 0.19 -0.4
870,775 - ABZR86_RS03970 0.19 +0.3
870,775 - ABZR86_RS03970 0.19 +0.3
870,775 - ABZR86_RS03970 0.19 -0.9
870,775 - ABZR86_RS03970 0.19 +0.3
870,775 - ABZR86_RS03970 0.19 +0.2
870,775 - ABZR86_RS03970 0.19 +0.9
870,775 - ABZR86_RS03970 0.19 -0.1
870,775 - ABZR86_RS03970 0.19 +0.1
870,784 - ABZR86_RS03970 0.20 +0.2
870,784 - ABZR86_RS03970 0.20 -0.1
870,784 - ABZR86_RS03970 0.20 +0.3
870,876 + ABZR86_RS03970 0.25 +0.2
870,876 + ABZR86_RS03970 0.25 -0.4
870,877 - ABZR86_RS03970 0.25 -0.0
870,877 - ABZR86_RS03970 0.25 -0.8
870,877 - ABZR86_RS03970 0.25 -1.2
870,877 - ABZR86_RS03970 0.25 +0.0
870,877 - ABZR86_RS03970 0.25 +0.0
870,877 - ABZR86_RS03970 0.25 -0.2
870,916 - ABZR86_RS03970 0.27 -1.0
870,917 + ABZR86_RS03970 0.27 -0.1
870,917 + ABZR86_RS03970 0.27 +0.3
870,917 + ABZR86_RS03970 0.27 -0.0
870,917 + ABZR86_RS03970 0.27 -0.2
870,917 + ABZR86_RS03970 0.27 -0.3
870,917 + ABZR86_RS03970 0.27 +0.1
870,917 + ABZR86_RS03970 0.27 +0.5
870,918 - ABZR86_RS03970 0.27 -0.1
870,918 - ABZR86_RS03970 0.27 -0.0
871,053 + ABZR86_RS03970 0.34 +0.1
871,053 + ABZR86_RS03970 0.34 -0.0
871,053 + ABZR86_RS03970 0.34 -1.3
871,053 + ABZR86_RS03970 0.34 +0.1
871,053 + ABZR86_RS03970 0.34 -0.1
871,054 - ABZR86_RS03970 0.34 +0.4
871,054 - ABZR86_RS03970 0.34 +0.0
871,055 + ABZR86_RS03970 0.34 +0.3
871,056 - ABZR86_RS03970 0.35 +0.4
871,056 - ABZR86_RS03970 0.35 +0.3
871,084 + ABZR86_RS03970 0.36 -0.0
871,131 - ABZR86_RS03970 0.39 -0.1
871,131 - ABZR86_RS03970 0.39 +0.4
871,131 - ABZR86_RS03970 0.39 +0.7
871,215 + ABZR86_RS03970 0.43 -0.2
871,321 - ABZR86_RS03970 0.49 -1.0
871,321 - ABZR86_RS03970 0.49 +0.9
871,321 - ABZR86_RS03970 0.49 +0.1

Or see this region's nucleotide sequence