Experiment: MoYLS4 with Bacitracin 1.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3067 and DvMF_3068 are separated by 156 nucleotides DvMF_3068 and DvMF_3069 are separated by 101 nucleotides DvMF_3069 and DvMF_3070 are separated by 147 nucleotides
DvMF_3067: DvMF_3067 - virulence factor MVIN family protein (RefSeq), at 3,872,867 to 3,874,483
_3067
DvMF_3068: DvMF_3068 - hypothetical protein (RefSeq), at 3,874,640 to 3,875,017
_3068
DvMF_3069: DvMF_3069 - hypothetical protein (RefSeq), at 3,875,119 to 3,875,436
_3069
DvMF_3070: DvMF_3070 - hypothetical protein (RefSeq), at 3,875,584 to 3,876,147
_3070
Position (kb)
3875
3876 Strain fitness (log2 ratio)
-2
-1
0
1 at 3874.663 kb on - strand at 3874.701 kb on + strand, within DvMF_3068 at 3874.946 kb on + strand, within DvMF_3068 at 3875.035 kb on + strand at 3875.054 kb on + strand at 3875.356 kb on + strand, within DvMF_3069 at 3875.382 kb on + strand, within DvMF_3069 at 3875.421 kb on + strand at 3875.469 kb on - strand at 3875.560 kb on - strand at 3875.708 kb on - strand, within DvMF_3070 at 3875.741 kb on - strand, within DvMF_3070 at 3875.741 kb on - strand, within DvMF_3070 at 3875.984 kb on + strand, within DvMF_3070 at 3876.205 kb on - strand at 3876.346 kb on + strand at 3876.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml remove 3,874,663 - -0.3 3,874,701 + DvMF_3068 0.16 -0.7 3,874,946 + DvMF_3068 0.81 -1.6 3,875,035 + -0.6 3,875,054 + +0.9 3,875,356 + DvMF_3069 0.75 -0.3 3,875,382 + DvMF_3069 0.83 -2.1 3,875,421 + -0.6 3,875,469 - -0.2 3,875,560 - -0.0 3,875,708 - DvMF_3070 0.22 +0.7 3,875,741 - DvMF_3070 0.28 +1.2 3,875,741 - DvMF_3070 0.28 +0.4 3,875,984 + DvMF_3070 0.71 +1.0 3,876,205 - -0.2 3,876,346 + -0.1 3,876,379 + -1.6
Or see this region's nucleotide sequence