Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3056

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3055 and DvMF_3056 are separated by 172 nucleotidesDvMF_3056 and DvMF_3057 are separated by 292 nucleotides DvMF_3055: DvMF_3055 - peptide methionine sulfoxide reductase (RefSeq), at 3,856,372 to 3,857,100 _3055 DvMF_3056: DvMF_3056 - aminoglycoside phosphotransferase (RefSeq), at 3,857,273 to 3,858,325 _3056 DvMF_3057: DvMF_3057 - DEAD/DEAH box helicase domain protein (RefSeq), at 3,858,618 to 3,860,351 _3057 Position (kb) 3857 3858 3859Strain fitness (log2 ratio) -2 -1 0 1at 3856.385 kb on + strandat 3856.385 kb on + strandat 3856.711 kb on + strand, within DvMF_3055at 3856.730 kb on + strand, within DvMF_3055at 3856.749 kb on + strand, within DvMF_3055at 3856.757 kb on - strand, within DvMF_3055at 3857.025 kb on + strand, within DvMF_3055at 3857.033 kb on - strandat 3857.033 kb on - strandat 3857.245 kb on - strandat 3857.526 kb on - strand, within DvMF_3056at 3857.698 kb on + strand, within DvMF_3056at 3857.876 kb on + strand, within DvMF_3056at 3858.103 kb on + strand, within DvMF_3056at 3858.223 kb on + strandat 3858.352 kb on - strandat 3858.444 kb on - strandat 3858.478 kb on + strandat 3858.694 kb on - strandat 3858.738 kb on + strandat 3858.835 kb on - strand, within DvMF_3057at 3858.992 kb on + strand, within DvMF_3057at 3859.211 kb on - strand, within DvMF_3057at 3859.289 kb on + strand, within DvMF_3057at 3859.297 kb on - strand, within DvMF_3057at 3859.304 kb on + strand, within DvMF_3057

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,856,385 + -1.4
3,856,385 + -0.9
3,856,711 + DvMF_3055 0.47 +0.3
3,856,730 + DvMF_3055 0.49 -0.6
3,856,749 + DvMF_3055 0.52 -0.4
3,856,757 - DvMF_3055 0.53 -1.6
3,857,025 + DvMF_3055 0.90 -1.0
3,857,033 - -0.8
3,857,033 - +0.4
3,857,245 - -2.2
3,857,526 - DvMF_3056 0.24 +1.1
3,857,698 + DvMF_3056 0.40 -0.9
3,857,876 + DvMF_3056 0.57 -0.5
3,858,103 + DvMF_3056 0.79 -0.3
3,858,223 + -1.1
3,858,352 - -0.4
3,858,444 - -0.3
3,858,478 + -1.4
3,858,694 - +0.0
3,858,738 + -1.0
3,858,835 - DvMF_3057 0.13 -2.1
3,858,992 + DvMF_3057 0.22 -1.1
3,859,211 - DvMF_3057 0.34 -2.2
3,859,289 + DvMF_3057 0.39 -1.5
3,859,297 - DvMF_3057 0.39 -1.7
3,859,304 + DvMF_3057 0.40 -1.5

Or see this region's nucleotide sequence