Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3011

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3010 and DvMF_3011 are separated by 607 nucleotidesDvMF_3011 and DvMF_3012 are separated by 151 nucleotides DvMF_3010: DvMF_3010 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,796,862 to 3,798,667 _3010 DvMF_3011: DvMF_3011 - metal dependent phosphohydrolase (RefSeq), at 3,799,275 to 3,800,411 _3011 DvMF_3012: DvMF_3012 - hypothetical protein (RefSeq), at 3,800,563 to 3,802,239 _3012 Position (kb) 3799 3800 3801Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3798.384 kb on - strand, within DvMF_3010at 3798.490 kb on - strandat 3798.654 kb on + strandat 3798.823 kb on + strandat 3800.219 kb on - strand, within DvMF_3011at 3800.550 kb on + strandat 3800.791 kb on + strand, within DvMF_3012at 3800.867 kb on + strand, within DvMF_3012

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,798,384 - DvMF_3010 0.84 -1.2
3,798,490 - -1.1
3,798,654 + -1.6
3,798,823 + +3.3
3,800,219 - DvMF_3011 0.83 -0.0
3,800,550 + -0.6
3,800,791 + DvMF_3012 0.14 -2.2
3,800,867 + DvMF_3012 0.18 -0.9

Or see this region's nucleotide sequence