Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2911

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2910 and DvMF_2911 are separated by 60 nucleotidesDvMF_2911 and DvMF_2912 are separated by 118 nucleotides DvMF_2910: DvMF_2910 - glycosyl transferase group 1 (RefSeq), at 3,678,433 to 3,679,689 _2910 DvMF_2911: DvMF_2911 - flagellar protein FliS (RefSeq), at 3,679,750 to 3,680,577 _2911 DvMF_2912: DvMF_2912 - flagellar hook-associated 2 domain protein (RefSeq), at 3,680,696 to 3,682,429 _2912 Position (kb) 3679 3680 3681Strain fitness (log2 ratio) -1 0 1 2 3at 3679.017 kb on - strand, within DvMF_2910at 3679.075 kb on - strand, within DvMF_2910at 3679.080 kb on - strand, within DvMF_2910at 3679.173 kb on + strand, within DvMF_2910at 3679.189 kb on - strand, within DvMF_2910at 3679.309 kb on + strand, within DvMF_2910at 3679.327 kb on + strand, within DvMF_2910at 3679.357 kb on + strand, within DvMF_2910at 3679.384 kb on + strand, within DvMF_2910at 3679.464 kb on - strand, within DvMF_2910at 3679.464 kb on - strand, within DvMF_2910at 3679.464 kb on - strand, within DvMF_2910at 3679.490 kb on + strand, within DvMF_2910at 3679.604 kb on + strandat 3679.631 kb on - strandat 3679.978 kb on - strand, within DvMF_2911at 3680.000 kb on - strand, within DvMF_2911at 3680.113 kb on - strand, within DvMF_2911at 3680.750 kb on - strandat 3680.764 kb on + strandat 3680.772 kb on - strandat 3681.162 kb on + strand, within DvMF_2912at 3681.162 kb on + strand, within DvMF_2912at 3681.323 kb on - strand, within DvMF_2912at 3681.402 kb on - strand, within DvMF_2912at 3681.476 kb on + strand, within DvMF_2912

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,679,017 - DvMF_2910 0.46 -0.4
3,679,075 - DvMF_2910 0.51 -0.0
3,679,080 - DvMF_2910 0.51 -1.1
3,679,173 + DvMF_2910 0.59 +3.6
3,679,189 - DvMF_2910 0.60 -0.0
3,679,309 + DvMF_2910 0.70 -1.1
3,679,327 + DvMF_2910 0.71 -0.4
3,679,357 + DvMF_2910 0.74 -0.6
3,679,384 + DvMF_2910 0.76 -1.2
3,679,464 - DvMF_2910 0.82 -0.4
3,679,464 - DvMF_2910 0.82 -0.7
3,679,464 - DvMF_2910 0.82 -0.8
3,679,490 + DvMF_2910 0.84 -0.8
3,679,604 + -1.1
3,679,631 - -0.8
3,679,978 - DvMF_2911 0.28 -0.8
3,680,000 - DvMF_2911 0.30 -1.1
3,680,113 - DvMF_2911 0.44 +1.3
3,680,750 - +1.8
3,680,764 + +1.5
3,680,772 - +0.8
3,681,162 + DvMF_2912 0.27 +0.2
3,681,162 + DvMF_2912 0.27 -0.0
3,681,323 - DvMF_2912 0.36 +0.6
3,681,402 - DvMF_2912 0.41 +0.5
3,681,476 + DvMF_2912 0.45 +0.9

Or see this region's nucleotide sequence