Experiment: MoYLS4 with Bacitracin 1.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2889 and DvMF_2890 are separated by 117 nucleotides DvMF_2890 and DvMF_2891 overlap by 11 nucleotides DvMF_2891 and DvMF_2892 are separated by 881 nucleotides
DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554
_2889
DvMF_2890: DvMF_2890 - hypothetical protein (RefSeq), at 3,646,672 to 3,646,905
_2890
DvMF_2891: DvMF_2891 - 5-enolpyruvylshikimate-3-phosphate synthase-like protein (RefSeq), at 3,646,895 to 3,648,772
_2891
DvMF_2892: DvMF_2892 - adenylylsulfate reductase, beta subunit (RefSeq), at 3,649,654 to 3,650,157
_2892
Position (kb)
3646
3647
3648
3649 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3646.171 kb on + strand, within DvMF_2889 at 3646.235 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.465 kb on - strand at 3646.979 kb on + strand at 3647.063 kb on - strand at 3647.106 kb on - strand, within DvMF_2891 at 3647.242 kb on - strand, within DvMF_2891 at 3647.442 kb on - strand, within DvMF_2891 at 3647.545 kb on + strand, within DvMF_2891 at 3647.724 kb on + strand, within DvMF_2891 at 3647.744 kb on + strand, within DvMF_2891 at 3647.747 kb on - strand, within DvMF_2891 at 3647.897 kb on + strand, within DvMF_2891 at 3647.962 kb on - strand, within DvMF_2891 at 3648.298 kb on + strand, within DvMF_2891 at 3648.306 kb on - strand, within DvMF_2891 at 3648.507 kb on - strand, within DvMF_2891 at 3648.519 kb on + strand, within DvMF_2891 at 3648.646 kb on + strand at 3648.884 kb on - strand at 3648.887 kb on + strand at 3649.016 kb on + strand at 3649.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml remove 3,646,171 + DvMF_2889 0.68 -1.4 3,646,235 + DvMF_2889 0.73 +0.9 3,646,283 + DvMF_2889 0.77 -0.1 3,646,283 + DvMF_2889 0.77 +0.2 3,646,465 - -1.7 3,646,979 + -0.0 3,647,063 - +0.4 3,647,106 - DvMF_2891 0.11 +0.1 3,647,242 - DvMF_2891 0.18 +5.2 3,647,442 - DvMF_2891 0.29 +0.6 3,647,545 + DvMF_2891 0.35 +0.4 3,647,724 + DvMF_2891 0.44 +0.2 3,647,744 + DvMF_2891 0.45 +0.6 3,647,747 - DvMF_2891 0.45 +1.0 3,647,897 + DvMF_2891 0.53 +0.3 3,647,962 - DvMF_2891 0.57 +1.1 3,648,298 + DvMF_2891 0.75 -0.7 3,648,306 - DvMF_2891 0.75 -0.6 3,648,507 - DvMF_2891 0.86 +1.7 3,648,519 + DvMF_2891 0.86 +0.8 3,648,646 + +0.8 3,648,884 - -0.3 3,648,887 + -0.9 3,649,016 + -0.1 3,649,361 - -0.3
Or see this region's nucleotide sequence