Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2870

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2868 and DvMF_2869 are separated by 100 nucleotidesDvMF_2869 and DvMF_2870 are separated by 325 nucleotidesDvMF_2870 and DvMF_2871 overlap by 11 nucleotides DvMF_2868: DvMF_2868 - Transglycosylase-associated protein (RefSeq), at 3,621,698 to 3,621,940 _2868 DvMF_2869: DvMF_2869 - hypothetical protein (RefSeq), at 3,622,041 to 3,622,559 _2869 DvMF_2870: DvMF_2870 - OmpA/MotB domain protein (RefSeq), at 3,622,885 to 3,623,631 _2870 DvMF_2871: DvMF_2871 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,623,621 to 3,624,376 _2871 Position (kb) 3622 3623 3624Strain fitness (log2 ratio) -1 0 1at 3622.155 kb on + strand, within DvMF_2869at 3622.403 kb on + strand, within DvMF_2869at 3622.516 kb on - strandat 3622.622 kb on + strandat 3622.669 kb on + strandat 3622.700 kb on - strandat 3622.876 kb on + strandat 3622.876 kb on + strandat 3622.886 kb on - strandat 3622.989 kb on - strand, within DvMF_2870at 3623.028 kb on - strand, within DvMF_2870at 3623.076 kb on + strand, within DvMF_2870at 3623.180 kb on - strand, within DvMF_2870at 3623.347 kb on + strand, within DvMF_2870at 3623.460 kb on + strand, within DvMF_2870at 3623.769 kb on - strand, within DvMF_2871at 3623.803 kb on + strand, within DvMF_2871

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,622,155 + DvMF_2869 0.22 -0.6
3,622,403 + DvMF_2869 0.70 -0.5
3,622,516 - -0.9
3,622,622 + +1.3
3,622,669 + -0.7
3,622,700 - -0.4
3,622,876 + -0.4
3,622,876 + +0.1
3,622,886 - +1.1
3,622,989 - DvMF_2870 0.14 -0.3
3,623,028 - DvMF_2870 0.19 -0.9
3,623,076 + DvMF_2870 0.26 -0.7
3,623,180 - DvMF_2870 0.39 -0.4
3,623,347 + DvMF_2870 0.62 -0.8
3,623,460 + DvMF_2870 0.77 -0.6
3,623,769 - DvMF_2871 0.20 +0.2
3,623,803 + DvMF_2871 0.24 +0.3

Or see this region's nucleotide sequence