Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2851

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2850 and DvMF_2851 are separated by 430 nucleotidesDvMF_2851 and DvMF_2852 are separated by 421 nucleotidesDvMF_2852 and DvMF_2853 overlap by 4 nucleotides DvMF_2850: DvMF_2850 - hypothetical protein (RefSeq), at 3,602,422 to 3,603,507 _2850 DvMF_2851: DvMF_2851 - diguanylate cyclase and serine/threonine protein kinase with TPR repeats (RefSeq), at 3,603,938 to 3,606,361 _2851 DvMF_2852: DvMF_2852 - nitroreductase (RefSeq), at 3,606,783 to 3,607,319 _2852 DvMF_2853: DvMF_2853 - beta-lactamase domain protein (RefSeq), at 3,607,316 to 3,607,948 _2853 Position (kb) 3603 3604 3605 3606 3607Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3603.132 kb on + strand, within DvMF_2850at 3603.643 kb on + strandat 3603.643 kb on + strandat 3603.651 kb on - strandat 3603.651 kb on - strandat 3603.797 kb on + strandat 3603.994 kb on + strandat 3604.002 kb on + strandat 3604.193 kb on + strand, within DvMF_2851at 3604.266 kb on + strand, within DvMF_2851at 3604.432 kb on + strand, within DvMF_2851at 3604.603 kb on - strand, within DvMF_2851at 3604.608 kb on - strand, within DvMF_2851at 3604.671 kb on + strand, within DvMF_2851at 3604.837 kb on + strand, within DvMF_2851at 3605.270 kb on + strand, within DvMF_2851at 3605.318 kb on - strand, within DvMF_2851at 3605.318 kb on - strand, within DvMF_2851at 3605.380 kb on - strand, within DvMF_2851at 3605.599 kb on - strand, within DvMF_2851at 3605.599 kb on - strand, within DvMF_2851at 3605.614 kb on + strand, within DvMF_2851at 3605.671 kb on + strand, within DvMF_2851at 3606.063 kb on + strand, within DvMF_2851at 3606.081 kb on - strand, within DvMF_2851at 3606.240 kb on - strandat 3606.301 kb on - strandat 3606.401 kb on - strandat 3606.577 kb on - strandat 3606.655 kb on + strandat 3607.201 kb on + strand, within DvMF_2852

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,603,132 + DvMF_2850 0.65 -1.9
3,603,643 + -0.4
3,603,643 + -0.1
3,603,651 - -0.8
3,603,651 - -0.6
3,603,797 + -1.6
3,603,994 + +0.9
3,604,002 + +1.7
3,604,193 + DvMF_2851 0.11 +1.2
3,604,266 + DvMF_2851 0.14 +1.5
3,604,432 + DvMF_2851 0.20 +1.5
3,604,603 - DvMF_2851 0.27 +1.7
3,604,608 - DvMF_2851 0.28 +2.1
3,604,671 + DvMF_2851 0.30 +1.1
3,604,837 + DvMF_2851 0.37 +1.1
3,605,270 + DvMF_2851 0.55 +1.6
3,605,318 - DvMF_2851 0.57 +1.4
3,605,318 - DvMF_2851 0.57 +1.4
3,605,380 - DvMF_2851 0.59 +1.2
3,605,599 - DvMF_2851 0.69 +1.3
3,605,599 - DvMF_2851 0.69 +1.9
3,605,614 + DvMF_2851 0.69 -0.1
3,605,671 + DvMF_2851 0.71 +1.5
3,606,063 + DvMF_2851 0.88 +1.3
3,606,081 - DvMF_2851 0.88 +1.7
3,606,240 - +0.9
3,606,301 - +1.7
3,606,401 - +2.5
3,606,577 - -0.6
3,606,655 + +5.6
3,607,201 + DvMF_2852 0.78 -0.6

Or see this region's nucleotide sequence