Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2848

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2847 and DvMF_2848 are separated by 194 nucleotidesDvMF_2848 and DvMF_2849 are separated by 277 nucleotides DvMF_2847: DvMF_2847 - no description, at 3,598,726 to 3,600,155 _2847 DvMF_2848: DvMF_2848 - CBS domain containing membrane protein (RefSeq), at 3,600,350 to 3,601,021 _2848 DvMF_2849: DvMF_2849 - protein of unknown function DUF161 (RefSeq), at 3,601,299 to 3,602,165 _2849 Position (kb) 3600 3601 3602Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3599.369 kb on - strand, within DvMF_2847at 3599.654 kb on - strand, within DvMF_2847at 3599.780 kb on - strand, within DvMF_2847at 3600.112 kb on - strandat 3600.189 kb on - strandat 3600.444 kb on + strand, within DvMF_2848at 3601.246 kb on - strandat 3601.575 kb on + strand, within DvMF_2849at 3601.583 kb on - strand, within DvMF_2849at 3601.674 kb on - strand, within DvMF_2849

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,599,369 - DvMF_2847 0.45 +3.0
3,599,654 - DvMF_2847 0.65 +2.6
3,599,780 - DvMF_2847 0.74 +2.0
3,600,112 - +1.5
3,600,189 - +0.7
3,600,444 + DvMF_2848 0.14 -1.9
3,601,246 - -0.6
3,601,575 + DvMF_2849 0.32 -0.5
3,601,583 - DvMF_2849 0.33 -0.7
3,601,674 - DvMF_2849 0.43 -0.7

Or see this region's nucleotide sequence