Experiment: MoYLS4 with Bacitracin 1.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2533 and DvMF_2534 are separated by 7 nucleotides DvMF_2534 and DvMF_2535 are separated by 113 nucleotides DvMF_2535 and DvMF_2536 are separated by 27 nucleotides
DvMF_2533: DvMF_2533 - formate dehydrogenase, alpha subunit (RefSeq), at 3,196,674 to 3,199,706
_2533
DvMF_2534: DvMF_2534 - formate dehydrogenase beta subunit (RefSeq), at 3,199,714 to 3,200,466
_2534
DvMF_2535: DvMF_2535 - Methyltransferase type 11 (RefSeq), at 3,200,580 to 3,201,257
_2535
DvMF_2536: DvMF_2536 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,201,285 to 3,202,718
_2536
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3199.701 kb on + strand at 3199.755 kb on - strand at 3199.878 kb on + strand, within DvMF_2534 at 3199.900 kb on + strand, within DvMF_2534 at 3199.952 kb on + strand, within DvMF_2534 at 3199.960 kb on - strand, within DvMF_2534 at 3200.340 kb on - strand, within DvMF_2534 at 3200.461 kb on + strand at 3200.461 kb on + strand at 3200.461 kb on + strand at 3200.469 kb on - strand at 3200.469 kb on - strand at 3200.498 kb on - strand at 3200.577 kb on + strand at 3200.818 kb on + strand, within DvMF_2535 at 3200.818 kb on + strand, within DvMF_2535 at 3200.826 kb on - strand, within DvMF_2535 at 3201.142 kb on - strand, within DvMF_2535 at 3201.215 kb on + strand at 3201.223 kb on - strand at 3201.339 kb on + strand at 3201.722 kb on - strand, within DvMF_2536 at 3202.132 kb on - strand, within DvMF_2536 at 3202.134 kb on + strand, within DvMF_2536 at 3202.142 kb on - strand, within DvMF_2536 at 3202.142 kb on - strand, within DvMF_2536
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml remove 3,199,701 + -0.3 3,199,755 - -1.1 3,199,878 + DvMF_2534 0.22 -1.4 3,199,900 + DvMF_2534 0.25 -1.2 3,199,952 + DvMF_2534 0.32 +0.8 3,199,960 - DvMF_2534 0.33 -0.3 3,200,340 - DvMF_2534 0.83 -0.3 3,200,461 + -0.4 3,200,461 + -0.3 3,200,461 + +3.4 3,200,469 - -0.4 3,200,469 - -0.7 3,200,498 - -1.9 3,200,577 + +0.1 3,200,818 + DvMF_2535 0.35 +0.3 3,200,818 + DvMF_2535 0.35 -0.7 3,200,826 - DvMF_2535 0.36 -0.4 3,201,142 - DvMF_2535 0.83 -1.1 3,201,215 + -3.2 3,201,223 - -1.2 3,201,339 + -0.2 3,201,722 - DvMF_2536 0.30 -0.4 3,202,132 - DvMF_2536 0.59 -0.6 3,202,134 + DvMF_2536 0.59 -0.8 3,202,142 - DvMF_2536 0.60 -1.5 3,202,142 - DvMF_2536 0.60 -0.0
Or see this region's nucleotide sequence