Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2525

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2524 and DvMF_2525 are separated by 18 nucleotidesDvMF_2525 and DvMF_2526 are separated by 12 nucleotidesDvMF_2526 and DvMF_2527 overlap by 25 nucleotidesDvMF_2527 and DvMF_2528 are separated by 166 nucleotides DvMF_2524: DvMF_2524 - flagellar hook-associated protein FlgK (RefSeq), at 3,182,218 to 3,184,326 _2524 DvMF_2525: DvMF_2525 - flagellar hook-associated protein 3 (RefSeq), at 3,184,345 to 3,185,868 _2525 DvMF_2526: DvMF_2526 - carbon storage regulator, CsrA (RefSeq), at 3,185,881 to 3,186,120 _2526 DvMF_2527: DvMF_2527 - flagellar assembly protein FliW (RefSeq), at 3,186,096 to 3,186,647 _2527 DvMF_2528: DvMF_2528 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 3,186,814 to 3,188,553 _2528 Position (kb) 3184 3185 3186Strain fitness (log2 ratio) -1 0 1at 3183.474 kb on - strand, within DvMF_2524at 3183.561 kb on - strand, within DvMF_2524at 3183.758 kb on - strand, within DvMF_2524at 3183.758 kb on - strand, within DvMF_2524at 3183.797 kb on + strand, within DvMF_2524at 3184.063 kb on - strand, within DvMF_2524at 3184.596 kb on + strand, within DvMF_2525at 3184.722 kb on + strand, within DvMF_2525at 3184.822 kb on - strand, within DvMF_2525at 3185.111 kb on - strand, within DvMF_2525at 3185.483 kb on + strand, within DvMF_2525at 3185.500 kb on + strand, within DvMF_2525at 3185.747 kb on + strandat 3185.967 kb on + strand, within DvMF_2526at 3186.155 kb on + strand, within DvMF_2527at 3186.327 kb on - strand, within DvMF_2527at 3186.818 kb on - strandat 3186.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,183,474 - DvMF_2524 0.60 +0.1
3,183,561 - DvMF_2524 0.64 +0.4
3,183,758 - DvMF_2524 0.73 +0.7
3,183,758 - DvMF_2524 0.73 -0.1
3,183,797 + DvMF_2524 0.75 +1.0
3,184,063 - DvMF_2524 0.87 +0.3
3,184,596 + DvMF_2525 0.16 +0.4
3,184,722 + DvMF_2525 0.25 -0.2
3,184,822 - DvMF_2525 0.31 +0.3
3,185,111 - DvMF_2525 0.50 +0.7
3,185,483 + DvMF_2525 0.75 -0.6
3,185,500 + DvMF_2525 0.76 +0.2
3,185,747 + +0.4
3,185,967 + DvMF_2526 0.36 +1.7
3,186,155 + DvMF_2527 0.11 -0.2
3,186,327 - DvMF_2527 0.42 -0.8
3,186,818 - -1.7
3,186,848 + -1.0

Or see this region's nucleotide sequence