Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2439

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2438 and DvMF_2439 overlap by 4 nucleotidesDvMF_2439 and DvMF_2440 are separated by 29 nucleotidesDvMF_2440 and DvMF_2441 are separated by 14 nucleotides DvMF_2438: DvMF_2438 - type III secretion system apparatus protein YscQ/HrcQ (RefSeq), at 3,072,806 to 3,074,035 _2438 DvMF_2439: DvMF_2439 - type III secretion system protein (RefSeq), at 3,074,032 to 3,074,682 _2439 DvMF_2440: DvMF_2440 - anti-sigma-factor antagonist (RefSeq), at 3,074,712 to 3,075,047 _2440 DvMF_2441: DvMF_2441 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 3,075,062 to 3,075,478 _2441 Position (kb) 3074 3075Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3073.076 kb on - strand, within DvMF_2438at 3073.432 kb on + strand, within DvMF_2438at 3073.461 kb on + strand, within DvMF_2438at 3073.806 kb on + strand, within DvMF_2438at 3073.999 kb on + strandat 3074.089 kb on - strandat 3074.484 kb on + strand, within DvMF_2439at 3074.492 kb on - strand, within DvMF_2439at 3074.624 kb on + strandat 3074.720 kb on + strandat 3074.720 kb on + strandat 3074.730 kb on + strandat 3074.865 kb on - strand, within DvMF_2440at 3074.865 kb on - strand, within DvMF_2440at 3074.911 kb on - strand, within DvMF_2440at 3074.926 kb on + strand, within DvMF_2440at 3075.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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3,073,076 - DvMF_2438 0.22 -0.4
3,073,432 + DvMF_2438 0.51 -0.4
3,073,461 + DvMF_2438 0.53 -0.6
3,073,806 + DvMF_2438 0.81 -0.4
3,073,999 + -1.2
3,074,089 - -0.3
3,074,484 + DvMF_2439 0.69 -1.7
3,074,492 - DvMF_2439 0.71 -1.2
3,074,624 + -0.8
3,074,720 + -1.5
3,074,720 + -3.8
3,074,730 + -0.1
3,074,865 - DvMF_2440 0.46 -0.7
3,074,865 - DvMF_2440 0.46 -0.5
3,074,911 - DvMF_2440 0.59 -0.4
3,074,926 + DvMF_2440 0.64 -0.6
3,075,539 + -1.5

Or see this region's nucleotide sequence