Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2340

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2339 and DvMF_2340 are separated by 3 nucleotidesDvMF_2340 and DvMF_2341 are separated by 568 nucleotidesDvMF_2341 and DvMF_2342 are separated by 28 nucleotides DvMF_2339: DvMF_2339 - Pyruvate, water dikinase (RefSeq), at 2,946,905 to 2,949,511 _2339 DvMF_2340: DvMF_2340 - Sigma 54 interacting domain protein (RefSeq), at 2,949,515 to 2,952,328 _2340 DvMF_2341: DvMF_2341 - hypothetical protein (RefSeq), at 2,952,897 to 2,953,190 _2341 DvMF_2342: DvMF_2342 - protein of unknown function DUF81 (RefSeq), at 2,953,219 to 2,954,271 _2342 Position (kb) 2949 2950 2951 2952 2953Strain fitness (log2 ratio) -1 0 1 2at 2948.517 kb on - strand, within DvMF_2339at 2948.635 kb on - strand, within DvMF_2339at 2949.128 kb on - strand, within DvMF_2339at 2949.133 kb on - strand, within DvMF_2339at 2949.255 kb on + strandat 2949.360 kb on + strandat 2949.378 kb on + strandat 2949.926 kb on + strand, within DvMF_2340at 2950.279 kb on - strand, within DvMF_2340at 2950.332 kb on + strand, within DvMF_2340at 2950.529 kb on + strand, within DvMF_2340at 2950.631 kb on - strand, within DvMF_2340at 2950.734 kb on - strand, within DvMF_2340at 2951.114 kb on + strand, within DvMF_2340at 2951.435 kb on + strand, within DvMF_2340at 2951.470 kb on + strand, within DvMF_2340at 2951.742 kb on - strand, within DvMF_2340at 2951.801 kb on + strand, within DvMF_2340at 2951.802 kb on + strand, within DvMF_2340at 2951.810 kb on - strand, within DvMF_2340at 2952.066 kb on + strandat 2952.066 kb on + strandat 2953.024 kb on + strand, within DvMF_2341at 2953.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,948,517 - DvMF_2339 0.62 -0.8
2,948,635 - DvMF_2339 0.66 -0.5
2,949,128 - DvMF_2339 0.85 +0.3
2,949,133 - DvMF_2339 0.85 -1.1
2,949,255 + -0.6
2,949,360 + -1.2
2,949,378 + -0.4
2,949,926 + DvMF_2340 0.15 +1.6
2,950,279 - DvMF_2340 0.27 +2.3
2,950,332 + DvMF_2340 0.29 +2.3
2,950,529 + DvMF_2340 0.36 +2.0
2,950,631 - DvMF_2340 0.40 +1.7
2,950,734 - DvMF_2340 0.43 +1.0
2,951,114 + DvMF_2340 0.57 +1.5
2,951,435 + DvMF_2340 0.68 +1.5
2,951,470 + DvMF_2340 0.69 +1.4
2,951,742 - DvMF_2340 0.79 +1.1
2,951,801 + DvMF_2340 0.81 +2.5
2,951,802 + DvMF_2340 0.81 +0.5
2,951,810 - DvMF_2340 0.82 +1.0
2,952,066 + +0.8
2,952,066 + +2.0
2,953,024 + DvMF_2341 0.43 -1.5
2,953,201 + -0.8

Or see this region's nucleotide sequence