Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2266

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2265 and DvMF_2266 are separated by 184 nucleotidesDvMF_2266 and DvMF_2267 overlap by 1 nucleotides DvMF_2265: DvMF_2265 - transcriptional regulator, MarR family (RefSeq), at 2,845,697 to 2,846,587 _2265 DvMF_2266: DvMF_2266 - putative lipoprotein (RefSeq), at 2,846,772 to 2,848,310 _2266 DvMF_2267: DvMF_2267 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (RefSeq), at 2,848,310 to 2,849,344 _2267 Position (kb) 2846 2847 2848 2849Strain fitness (log2 ratio) -1 0 1at 2845.952 kb on + strand, within DvMF_2265at 2845.952 kb on + strand, within DvMF_2265at 2845.971 kb on - strand, within DvMF_2265at 2847.030 kb on + strand, within DvMF_2266at 2847.042 kb on + strand, within DvMF_2266at 2847.103 kb on - strand, within DvMF_2266at 2847.283 kb on - strand, within DvMF_2266at 2847.601 kb on + strand, within DvMF_2266at 2847.609 kb on - strand, within DvMF_2266at 2847.688 kb on - strand, within DvMF_2266at 2847.777 kb on + strand, within DvMF_2266at 2847.839 kb on + strand, within DvMF_2266at 2847.839 kb on + strand, within DvMF_2266at 2847.850 kb on + strand, within DvMF_2266at 2847.850 kb on + strand, within DvMF_2266at 2847.858 kb on - strand, within DvMF_2266at 2848.164 kb on - strandat 2848.243 kb on + strandat 2848.277 kb on + strandat 2848.297 kb on + strandat 2848.381 kb on + strandat 2848.471 kb on - strand, within DvMF_2267at 2848.603 kb on + strand, within DvMF_2267at 2848.675 kb on + strand, within DvMF_2267at 2848.683 kb on - strand, within DvMF_2267at 2848.694 kb on + strand, within DvMF_2267at 2848.711 kb on - strand, within DvMF_2267at 2848.711 kb on - strand, within DvMF_2267at 2848.785 kb on + strand, within DvMF_2267at 2848.785 kb on + strand, within DvMF_2267at 2849.223 kb on - strand, within DvMF_2267

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,845,952 + DvMF_2265 0.29 -1.3
2,845,952 + DvMF_2265 0.29 -1.6
2,845,971 - DvMF_2265 0.31 -1.6
2,847,030 + DvMF_2266 0.17 +0.5
2,847,042 + DvMF_2266 0.18 +0.2
2,847,103 - DvMF_2266 0.22 +0.4
2,847,283 - DvMF_2266 0.33 +0.5
2,847,601 + DvMF_2266 0.54 +0.1
2,847,609 - DvMF_2266 0.54 +0.5
2,847,688 - DvMF_2266 0.60 +0.2
2,847,777 + DvMF_2266 0.65 +0.3
2,847,839 + DvMF_2266 0.69 +0.2
2,847,839 + DvMF_2266 0.69 -0.1
2,847,850 + DvMF_2266 0.70 +1.3
2,847,850 + DvMF_2266 0.70 +0.4
2,847,858 - DvMF_2266 0.71 +0.7
2,848,164 - +0.4
2,848,243 + +1.2
2,848,277 + +0.6
2,848,297 + +0.5
2,848,381 + +0.3
2,848,471 - DvMF_2267 0.16 -0.2
2,848,603 + DvMF_2267 0.28 +0.0
2,848,675 + DvMF_2267 0.35 -0.4
2,848,683 - DvMF_2267 0.36 +0.1
2,848,694 + DvMF_2267 0.37 -0.7
2,848,711 - DvMF_2267 0.39 -0.0
2,848,711 - DvMF_2267 0.39 -0.7
2,848,785 + DvMF_2267 0.46 +0.3
2,848,785 + DvMF_2267 0.46 +0.9
2,849,223 - DvMF_2267 0.88 +0.3

Or see this region's nucleotide sequence