Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2213

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2211 and DvMF_2212 are separated by 81 nucleotidesDvMF_2212 and DvMF_2213 are separated by 26 nucleotidesDvMF_2213 and DvMF_2214 are separated by 103 nucleotidesDvMF_2214 and fliP are separated by 139 nucleotides DvMF_2211: DvMF_2211 - OmpA/MotB domain protein (RefSeq), at 2,764,982 to 2,765,917 _2211 DvMF_2212: DvMF_2212 - flagellar basal body-associated protein FliL (RefSeq), at 2,765,999 to 2,766,514 _2212 DvMF_2213: DvMF_2213 - flagellar motor switch protein FliN (RefSeq), at 2,766,541 to 2,767,083 _2213 DvMF_2214: DvMF_2214 - flagellar biosynthesis protein FliO (RefSeq), at 2,767,187 to 2,767,762 _2214 DvMF_2215: fliP - flagellar biosynthesis protein FliP (RefSeq), at 2,767,902 to 2,768,783 fliP Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -1 0 1 2 3at 2765.550 kb on - strand, within DvMF_2211at 2765.679 kb on - strand, within DvMF_2211at 2765.823 kb on - strand, within DvMF_2211at 2765.868 kb on + strandat 2765.980 kb on - strandat 2766.054 kb on + strand, within DvMF_2212at 2766.172 kb on + strand, within DvMF_2212at 2766.468 kb on + strandat 2766.704 kb on + strand, within DvMF_2213at 2766.704 kb on + strand, within DvMF_2213at 2766.712 kb on - strand, within DvMF_2213at 2766.914 kb on - strand, within DvMF_2213at 2766.916 kb on + strand, within DvMF_2213at 2766.996 kb on + strand, within DvMF_2213at 2767.267 kb on - strand, within DvMF_2214at 2767.427 kb on - strand, within DvMF_2214at 2767.529 kb on - strand, within DvMF_2214at 2767.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,765,550 - DvMF_2211 0.61 -0.5
2,765,679 - DvMF_2211 0.74 -0.9
2,765,823 - DvMF_2211 0.90 -0.7
2,765,868 + -0.1
2,765,980 - -0.9
2,766,054 + DvMF_2212 0.11 +1.0
2,766,172 + DvMF_2212 0.34 +1.1
2,766,468 + +1.2
2,766,704 + DvMF_2213 0.30 -0.6
2,766,704 + DvMF_2213 0.30 +1.9
2,766,712 - DvMF_2213 0.31 +2.0
2,766,914 - DvMF_2213 0.69 +1.4
2,766,916 + DvMF_2213 0.69 +1.7
2,766,996 + DvMF_2213 0.84 +2.9
2,767,267 - DvMF_2214 0.14 -0.3
2,767,427 - DvMF_2214 0.42 +0.7
2,767,529 - DvMF_2214 0.59 +0.8
2,767,854 + +2.7

Or see this region's nucleotide sequence