Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2211

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2209 and DvMF_2210 are separated by 24 nucleotidesDvMF_2210 and DvMF_2211 are separated by 1 nucleotidesDvMF_2211 and DvMF_2212 are separated by 81 nucleotidesDvMF_2212 and DvMF_2213 are separated by 26 nucleotides DvMF_2209: DvMF_2209 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,763,274 to 2,764,032 _2209 DvMF_2210: DvMF_2210 - OmpA/MotB domain protein (RefSeq), at 2,764,057 to 2,764,980 _2210 DvMF_2211: DvMF_2211 - OmpA/MotB domain protein (RefSeq), at 2,764,982 to 2,765,917 _2211 DvMF_2212: DvMF_2212 - flagellar basal body-associated protein FliL (RefSeq), at 2,765,999 to 2,766,514 _2212 DvMF_2213: DvMF_2213 - flagellar motor switch protein FliN (RefSeq), at 2,766,541 to 2,767,083 _2213 Position (kb) 2764 2765 2766Strain fitness (log2 ratio) -1 0 1 2at 2764.049 kb on - strandat 2764.237 kb on + strand, within DvMF_2210at 2764.237 kb on + strand, within DvMF_2210at 2764.247 kb on + strand, within DvMF_2210at 2764.255 kb on - strand, within DvMF_2210at 2764.636 kb on + strand, within DvMF_2210at 2764.641 kb on + strand, within DvMF_2210at 2764.738 kb on - strand, within DvMF_2210at 2764.819 kb on - strand, within DvMF_2210at 2764.821 kb on + strand, within DvMF_2210at 2764.929 kb on - strandat 2765.108 kb on + strand, within DvMF_2211at 2765.109 kb on - strand, within DvMF_2211at 2765.128 kb on + strand, within DvMF_2211at 2765.131 kb on - strand, within DvMF_2211at 2765.141 kb on - strand, within DvMF_2211at 2765.256 kb on - strand, within DvMF_2211at 2765.499 kb on - strand, within DvMF_2211at 2765.510 kb on + strand, within DvMF_2211at 2765.550 kb on - strand, within DvMF_2211at 2765.679 kb on - strand, within DvMF_2211at 2765.823 kb on - strand, within DvMF_2211at 2765.868 kb on + strandat 2765.980 kb on - strandat 2766.054 kb on + strand, within DvMF_2212at 2766.172 kb on + strand, within DvMF_2212at 2766.468 kb on + strandat 2766.704 kb on + strand, within DvMF_2213at 2766.704 kb on + strand, within DvMF_2213at 2766.712 kb on - strand, within DvMF_2213at 2766.914 kb on - strand, within DvMF_2213at 2766.916 kb on + strand, within DvMF_2213

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,764,049 - -0.3
2,764,237 + DvMF_2210 0.19 -0.8
2,764,237 + DvMF_2210 0.19 +0.6
2,764,247 + DvMF_2210 0.21 -0.3
2,764,255 - DvMF_2210 0.21 -0.3
2,764,636 + DvMF_2210 0.63 +0.1
2,764,641 + DvMF_2210 0.63 -0.4
2,764,738 - DvMF_2210 0.74 +0.3
2,764,819 - DvMF_2210 0.82 -1.0
2,764,821 + DvMF_2210 0.83 -0.6
2,764,929 - -0.9
2,765,108 + DvMF_2211 0.13 -0.2
2,765,109 - DvMF_2211 0.14 +0.6
2,765,128 + DvMF_2211 0.16 -0.8
2,765,131 - DvMF_2211 0.16 -0.2
2,765,141 - DvMF_2211 0.17 +0.4
2,765,256 - DvMF_2211 0.29 -0.3
2,765,499 - DvMF_2211 0.55 -0.4
2,765,510 + DvMF_2211 0.56 -0.7
2,765,550 - DvMF_2211 0.61 -0.5
2,765,679 - DvMF_2211 0.74 -0.9
2,765,823 - DvMF_2211 0.90 -0.7
2,765,868 + -0.1
2,765,980 - -0.9
2,766,054 + DvMF_2212 0.11 +1.0
2,766,172 + DvMF_2212 0.34 +1.1
2,766,468 + +1.2
2,766,704 + DvMF_2213 0.30 -0.6
2,766,704 + DvMF_2213 0.30 +1.9
2,766,712 - DvMF_2213 0.31 +2.0
2,766,914 - DvMF_2213 0.69 +1.4
2,766,916 + DvMF_2213 0.69 +1.7

Or see this region's nucleotide sequence