Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1971

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1970 and DvMF_R0052 are separated by 445 nucleotidesDvMF_R0052 and DvMF_1971 are separated by 155 nucleotidesDvMF_1971 and DvMF_1972 are separated by 99 nucleotidesDvMF_1972 and DvMF_1973 overlap by 4 nucleotides DvMF_1970: DvMF_1970 - hypothetical protein (RefSeq), at 2,435,371 to 2,435,865 _1970 DvMF_R0052: DvMF_R0052 - tRNA-Leu (RefSeq), at 2,436,311 to 2,436,397 _R0052 DvMF_1971: DvMF_1971 - CRISPR-associated helicase Cas3 (RefSeq), at 2,436,553 to 2,438,775 _1971 DvMF_1972: DvMF_1972 - CRISPR-associated protein Cas5 family (RefSeq), at 2,438,875 to 2,439,540 _1972 DvMF_1973: DvMF_1973 - CRISPR-associated protein, Csd1 family (RefSeq), at 2,439,537 to 2,441,426 _1973 Position (kb) 2436 2437 2438 2439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2435.596 kb on - strand, within DvMF_1970at 2435.831 kb on - strandat 2435.885 kb on + strandat 2435.885 kb on + strandat 2435.895 kb on + strandat 2435.913 kb on - strandat 2436.095 kb on + strandat 2436.426 kb on + strandat 2436.434 kb on - strandat 2436.443 kb on - strandat 2436.470 kb on + strandat 2436.478 kb on - strandat 2436.762 kb on + strandat 2436.773 kb on + strandat 2436.845 kb on + strand, within DvMF_1971at 2436.853 kb on - strand, within DvMF_1971at 2436.892 kb on - strand, within DvMF_1971at 2436.977 kb on - strand, within DvMF_1971at 2437.159 kb on + strand, within DvMF_1971at 2437.238 kb on + strand, within DvMF_1971at 2437.281 kb on - strand, within DvMF_1971at 2437.325 kb on + strand, within DvMF_1971at 2437.335 kb on + strand, within DvMF_1971at 2437.369 kb on + strand, within DvMF_1971at 2437.414 kb on + strand, within DvMF_1971at 2437.504 kb on - strand, within DvMF_1971at 2437.510 kb on + strand, within DvMF_1971at 2437.510 kb on + strand, within DvMF_1971at 2437.549 kb on - strand, within DvMF_1971at 2437.655 kb on - strand, within DvMF_1971at 2437.828 kb on - strand, within DvMF_1971at 2437.868 kb on - strand, within DvMF_1971at 2437.888 kb on - strand, within DvMF_1971at 2437.893 kb on - strand, within DvMF_1971at 2437.944 kb on + strand, within DvMF_1971at 2438.029 kb on - strand, within DvMF_1971at 2438.106 kb on - strand, within DvMF_1971at 2438.263 kb on + strand, within DvMF_1971at 2438.271 kb on - strand, within DvMF_1971at 2438.430 kb on - strand, within DvMF_1971at 2438.580 kb on - strandat 2438.617 kb on + strandat 2438.657 kb on - strandat 2438.704 kb on - strandat 2438.711 kb on - strandat 2438.725 kb on - strandat 2438.738 kb on + strandat 2438.832 kb on + strandat 2438.908 kb on + strandat 2438.934 kb on + strandat 2439.086 kb on - strand, within DvMF_1972at 2439.188 kb on + strand, within DvMF_1972at 2439.202 kb on + strand, within DvMF_1972at 2439.360 kb on + strand, within DvMF_1972at 2439.368 kb on - strand, within DvMF_1972at 2439.529 kb on - strandat 2439.617 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
remove
2,435,596 - DvMF_1970 0.45 +0.5
2,435,831 - -1.2
2,435,885 + -2.8
2,435,885 + +4.2
2,435,895 + -0.6
2,435,913 - +0.8
2,436,095 + -0.6
2,436,426 + +0.1
2,436,434 - +3.5
2,436,443 - -0.4
2,436,470 + -1.2
2,436,478 - -2.0
2,436,762 + +0.2
2,436,773 + -0.9
2,436,845 + DvMF_1971 0.13 -0.2
2,436,853 - DvMF_1971 0.13 -0.2
2,436,892 - DvMF_1971 0.15 -1.7
2,436,977 - DvMF_1971 0.19 -1.2
2,437,159 + DvMF_1971 0.27 -0.8
2,437,238 + DvMF_1971 0.31 -0.6
2,437,281 - DvMF_1971 0.33 -1.2
2,437,325 + DvMF_1971 0.35 -2.0
2,437,335 + DvMF_1971 0.35 -0.5
2,437,369 + DvMF_1971 0.37 +0.4
2,437,414 + DvMF_1971 0.39 -0.2
2,437,504 - DvMF_1971 0.43 +0.5
2,437,510 + DvMF_1971 0.43 +1.5
2,437,510 + DvMF_1971 0.43 -1.3
2,437,549 - DvMF_1971 0.45 -0.8
2,437,655 - DvMF_1971 0.50 -0.7
2,437,828 - DvMF_1971 0.57 -0.6
2,437,868 - DvMF_1971 0.59 -0.0
2,437,888 - DvMF_1971 0.60 -0.8
2,437,893 - DvMF_1971 0.60 -1.5
2,437,944 + DvMF_1971 0.63 -0.6
2,438,029 - DvMF_1971 0.66 -0.9
2,438,106 - DvMF_1971 0.70 -0.7
2,438,263 + DvMF_1971 0.77 -0.5
2,438,271 - DvMF_1971 0.77 -1.2
2,438,430 - DvMF_1971 0.84 -0.4
2,438,580 - -1.1
2,438,617 + -0.6
2,438,657 - -0.4
2,438,704 - -0.6
2,438,711 - +0.0
2,438,725 - -2.4
2,438,738 + -0.8
2,438,832 + -0.5
2,438,908 + +0.5
2,438,934 + -1.6
2,439,086 - DvMF_1972 0.32 -2.7
2,439,188 + DvMF_1972 0.47 -0.4
2,439,202 + DvMF_1972 0.49 -1.4
2,439,360 + DvMF_1972 0.73 -0.8
2,439,368 - DvMF_1972 0.74 -0.8
2,439,529 - -1.1
2,439,617 - -1.0

Or see this region's nucleotide sequence