Experiment: MoYLS4 with Bacitracin 1.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1887 and DvMF_1888 are separated by 85 nucleotides DvMF_1888 and DvMF_1889 are separated by 8 nucleotides DvMF_1889 and DvMF_1890 are separated by 418 nucleotides
DvMF_1887: DvMF_1887 - glycosyl transferase family 2 (RefSeq), at 2,323,584 to 2,324,645
_1887
DvMF_1888: DvMF_1888 - DNA-3-methyladenine glycosylase I (RefSeq), at 2,324,731 to 2,325,333
_1888
DvMF_1889: DvMF_1889 - hypothetical protein (RefSeq), at 2,325,342 to 2,325,821
_1889
DvMF_1890: DvMF_1890 - iron-containing alcohol dehydrogenase (RefSeq), at 2,326,240 to 2,327,316
_1890
Position (kb)
2325
2326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 2324.411 kb on + strand, within DvMF_1887 at 2324.411 kb on + strand, within DvMF_1887 at 2324.419 kb on - strand, within DvMF_1887 at 2324.558 kb on + strand at 2324.639 kb on + strand at 2324.639 kb on + strand at 2324.647 kb on - strand at 2324.696 kb on - strand at 2324.717 kb on - strand at 2324.833 kb on - strand, within DvMF_1888 at 2324.937 kb on - strand, within DvMF_1888 at 2325.068 kb on + strand, within DvMF_1888 at 2325.099 kb on + strand, within DvMF_1888 at 2325.103 kb on - strand, within DvMF_1888 at 2325.112 kb on - strand, within DvMF_1888 at 2325.158 kb on + strand, within DvMF_1888 at 2325.294 kb on + strand at 2325.398 kb on - strand, within DvMF_1889 at 2325.567 kb on + strand, within DvMF_1889 at 2325.587 kb on - strand, within DvMF_1889 at 2325.646 kb on - strand, within DvMF_1889 at 2325.819 kb on + strand at 2325.882 kb on + strand at 2325.907 kb on - strand at 2326.223 kb on + strand at 2326.231 kb on - strand at 2326.231 kb on - strand at 2326.233 kb on - strand at 2326.292 kb on - strand at 2326.459 kb on - strand, within DvMF_1890 at 2326.506 kb on + strand, within DvMF_1890 at 2326.514 kb on - strand, within DvMF_1890 at 2326.649 kb on + strand, within DvMF_1890 at 2326.787 kb on - strand, within DvMF_1890
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml remove 2,324,411 + DvMF_1887 0.78 -1.1 2,324,411 + DvMF_1887 0.78 -0.2 2,324,419 - DvMF_1887 0.79 -1.7 2,324,558 + +0.3 2,324,639 + -1.2 2,324,639 + -0.6 2,324,647 - -0.9 2,324,696 - -0.4 2,324,717 - -0.8 2,324,833 - DvMF_1888 0.17 -0.5 2,324,937 - DvMF_1888 0.34 -0.9 2,325,068 + DvMF_1888 0.56 -1.0 2,325,099 + DvMF_1888 0.61 -0.2 2,325,103 - DvMF_1888 0.62 -0.8 2,325,112 - DvMF_1888 0.63 -0.5 2,325,158 + DvMF_1888 0.71 -0.7 2,325,294 + -0.2 2,325,398 - DvMF_1889 0.12 -0.9 2,325,567 + DvMF_1889 0.47 -1.5 2,325,587 - DvMF_1889 0.51 -0.9 2,325,646 - DvMF_1889 0.63 -0.4 2,325,819 + -0.2 2,325,882 + -0.9 2,325,907 - +7.5 2,326,223 + -0.9 2,326,231 - -0.3 2,326,231 - -0.6 2,326,233 - -0.6 2,326,292 - -0.4 2,326,459 - DvMF_1890 0.20 -3.0 2,326,506 + DvMF_1890 0.25 -3.0 2,326,514 - DvMF_1890 0.25 -2.2 2,326,649 + DvMF_1890 0.38 -2.5 2,326,787 - DvMF_1890 0.51 -2.9
Or see this region's nucleotide sequence