Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1862

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1861 and DvMF_1862 are separated by 170 nucleotidesDvMF_1862 and DvMF_1863 are separated by 4 nucleotides DvMF_1861: DvMF_1861 - L-lactate permease (RefSeq), at 2,281,606 to 2,283,315 _1861 DvMF_1862: DvMF_1862 - FAD linked oxidase domain protein (RefSeq), at 2,283,486 to 2,284,871 _1862 DvMF_1863: DvMF_1863 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 2,284,876 to 2,286,168 _1863 Position (kb) 2283 2284 2285Strain fitness (log2 ratio) -1 0 1at 2282.813 kb on - strand, within DvMF_1861at 2282.908 kb on + strand, within DvMF_1861at 2283.419 kb on + strandat 2283.419 kb on + strandat 2283.674 kb on + strand, within DvMF_1862at 2283.727 kb on + strand, within DvMF_1862at 2283.971 kb on + strand, within DvMF_1862at 2284.226 kb on + strand, within DvMF_1862at 2285.241 kb on + strand, within DvMF_1863at 2285.489 kb on + strand, within DvMF_1863

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,282,813 - DvMF_1861 0.71 +0.2
2,282,908 + DvMF_1861 0.76 -1.3
2,283,419 + +1.1
2,283,419 + -0.6
2,283,674 + DvMF_1862 0.14 -0.6
2,283,727 + DvMF_1862 0.17 +0.7
2,283,971 + DvMF_1862 0.35 +1.5
2,284,226 + DvMF_1862 0.53 +0.6
2,285,241 + DvMF_1863 0.28 -0.3
2,285,489 + DvMF_1863 0.47 -0.1

Or see this region's nucleotide sequence