Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1708

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1707 and DvMF_1708 are separated by 61 nucleotidesDvMF_1708 and DvMF_1709 are separated by 105 nucleotidesDvMF_1709 and DvMF_1710 are separated by 27 nucleotides DvMF_1707: DvMF_1707 - protein of unknown function UPF0118 (RefSeq), at 2,085,102 to 2,086,616 _1707 DvMF_1708: DvMF_1708 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,086,678 to 2,087,367 _1708 DvMF_1709: DvMF_1709 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 2,087,473 to 2,087,829 _1709 DvMF_1710: DvMF_1710 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,087,857 to 2,089,641 _1710 Position (kb) 2086 2087 2088Strain fitness (log2 ratio) -2 -1 0 1at 2085.783 kb on - strand, within DvMF_1707at 2086.016 kb on - strand, within DvMF_1707at 2086.272 kb on - strand, within DvMF_1707at 2086.384 kb on + strand, within DvMF_1707at 2086.392 kb on - strand, within DvMF_1707at 2086.449 kb on + strand, within DvMF_1707at 2086.604 kb on - strandat 2086.609 kb on - strandat 2086.678 kb on + strandat 2086.678 kb on + strandat 2086.937 kb on - strand, within DvMF_1708at 2086.992 kb on + strand, within DvMF_1708at 2086.994 kb on - strand, within DvMF_1708at 2087.459 kb on + strandat 2087.477 kb on - strandat 2087.601 kb on - strand, within DvMF_1709at 2087.606 kb on + strand, within DvMF_1709at 2087.606 kb on + strand, within DvMF_1709at 2087.766 kb on - strand, within DvMF_1709at 2087.803 kb on - strandat 2087.854 kb on + strandat 2087.902 kb on + strandat 2088.060 kb on + strand, within DvMF_1710at 2088.070 kb on + strand, within DvMF_1710at 2088.090 kb on + strand, within DvMF_1710at 2088.090 kb on + strand, within DvMF_1710at 2088.166 kb on + strand, within DvMF_1710

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,085,783 - DvMF_1707 0.45 -0.4
2,086,016 - DvMF_1707 0.60 -0.7
2,086,272 - DvMF_1707 0.77 -0.8
2,086,384 + DvMF_1707 0.85 +0.4
2,086,392 - DvMF_1707 0.85 -0.4
2,086,449 + DvMF_1707 0.89 -0.4
2,086,604 - +0.3
2,086,609 - -0.6
2,086,678 + -0.7
2,086,678 + -1.9
2,086,937 - DvMF_1708 0.38 -1.0
2,086,992 + DvMF_1708 0.46 -0.7
2,086,994 - DvMF_1708 0.46 -0.9
2,087,459 + -0.3
2,087,477 - -0.0
2,087,601 - DvMF_1709 0.36 -1.2
2,087,606 + DvMF_1709 0.37 -0.8
2,087,606 + DvMF_1709 0.37 -0.7
2,087,766 - DvMF_1709 0.82 -0.8
2,087,803 - -0.8
2,087,854 + -0.1
2,087,902 + -0.8
2,088,060 + DvMF_1710 0.11 -0.6
2,088,070 + DvMF_1710 0.12 -1.0
2,088,090 + DvMF_1710 0.13 -0.1
2,088,090 + DvMF_1710 0.13 -0.8
2,088,166 + DvMF_1710 0.17 -1.0

Or see this region's nucleotide sequence