Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1692

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1690 and DvMF_1691 are separated by 227 nucleotidesDvMF_1691 and DvMF_1692 are separated by 296 nucleotidesDvMF_1692 and DvMF_1693 are separated by 454 nucleotides DvMF_1690: DvMF_1690 - polysaccharide export protein (RefSeq), at 2,057,686 to 2,059,362 _1690 DvMF_1691: DvMF_1691 - hypothetical protein (RefSeq), at 2,059,590 to 2,059,991 _1691 DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853 _1692 DvMF_1693: DvMF_1693 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,062,308 to 2,064,083 _1693 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -3 -2 -1 0 1at 2059.395 kb on + strandat 2059.547 kb on - strandat 2059.917 kb on + strand, within DvMF_1691at 2060.222 kb on + strandat 2060.376 kb on + strandat 2060.531 kb on - strand, within DvMF_1692at 2060.947 kb on - strand, within DvMF_1692at 2061.013 kb on + strand, within DvMF_1692at 2061.243 kb on - strand, within DvMF_1692at 2061.413 kb on - strand, within DvMF_1692at 2061.433 kb on - strand, within DvMF_1692at 2061.493 kb on + strand, within DvMF_1692at 2061.529 kb on - strand, within DvMF_1692at 2061.698 kb on + strandat 2061.706 kb on - strandat 2061.748 kb on - strandat 2061.763 kb on + strandat 2061.763 kb on + strandat 2061.878 kb on + strandat 2061.939 kb on + strandat 2062.372 kb on - strandat 2062.417 kb on + strandat 2062.439 kb on + strandat 2062.643 kb on + strand, within DvMF_1693at 2062.675 kb on + strand, within DvMF_1693at 2062.748 kb on - strand, within DvMF_1693

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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2,059,395 + +0.4
2,059,547 - -1.0
2,059,917 + DvMF_1691 0.81 +1.1
2,060,222 + +1.0
2,060,376 + -2.0
2,060,531 - DvMF_1692 0.16 -1.3
2,060,947 - DvMF_1692 0.42 -0.6
2,061,013 + DvMF_1692 0.46 -1.4
2,061,243 - DvMF_1692 0.61 -1.0
2,061,413 - DvMF_1692 0.72 -1.1
2,061,433 - DvMF_1692 0.73 -0.5
2,061,493 + DvMF_1692 0.77 -1.0
2,061,529 - DvMF_1692 0.79 -1.3
2,061,698 + -0.2
2,061,706 - -0.7
2,061,748 - -1.1
2,061,763 + -3.2
2,061,763 + +1.0
2,061,878 + -0.7
2,061,939 + +1.0
2,062,372 - -0.7
2,062,417 + -1.6
2,062,439 + -1.2
2,062,643 + DvMF_1693 0.19 -0.7
2,062,675 + DvMF_1693 0.21 -1.0
2,062,748 - DvMF_1693 0.25 -0.2

Or see this region's nucleotide sequence