Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1573

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1572 and DvMF_1573 are separated by 169 nucleotidesDvMF_1573 and DvMF_1574 are separated by 48 nucleotides DvMF_1572: DvMF_1572 - flavin reductase domain protein FMN-binding (RefSeq), at 1,938,349 to 1,938,921 _1572 DvMF_1573: DvMF_1573 - Undecaprenyl-phosphate galactose phosphotransferase, WbaP (RefSeq), at 1,939,091 to 1,940,503 _1573 DvMF_1574: DvMF_1574 - glycosyl transferase family 9 (RefSeq), at 1,940,552 to 1,941,691 _1574 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 1938.250 kb on - strandat 1938.263 kb on - strandat 1938.530 kb on - strand, within DvMF_1572at 1938.646 kb on - strand, within DvMF_1572at 1938.917 kb on + strandat 1939.047 kb on + strandat 1939.143 kb on - strandat 1939.278 kb on - strand, within DvMF_1573at 1939.709 kb on + strand, within DvMF_1573at 1939.717 kb on - strand, within DvMF_1573at 1939.774 kb on + strand, within DvMF_1573at 1939.922 kb on - strand, within DvMF_1573at 1939.971 kb on - strand, within DvMF_1573at 1940.013 kb on + strand, within DvMF_1573at 1940.021 kb on - strand, within DvMF_1573at 1940.096 kb on - strand, within DvMF_1573at 1940.466 kb on - strandat 1940.466 kb on - strandat 1940.525 kb on + strandat 1940.525 kb on + strandat 1940.528 kb on - strandat 1940.618 kb on + strandat 1940.637 kb on + strandat 1940.716 kb on - strand, within DvMF_1574at 1941.107 kb on + strand, within DvMF_1574at 1941.199 kb on + strand, within DvMF_1574at 1941.338 kb on - strand, within DvMF_1574

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,938,250 - -1.5
1,938,263 - +0.1
1,938,530 - DvMF_1572 0.32 +4.1
1,938,646 - DvMF_1572 0.52 +0.2
1,938,917 + +0.1
1,939,047 + +2.0
1,939,143 - +5.4
1,939,278 - DvMF_1573 0.13 +5.9
1,939,709 + DvMF_1573 0.44 +5.7
1,939,717 - DvMF_1573 0.44 +5.7
1,939,774 + DvMF_1573 0.48 +5.6
1,939,922 - DvMF_1573 0.59 +6.0
1,939,971 - DvMF_1573 0.62 +5.9
1,940,013 + DvMF_1573 0.65 +5.2
1,940,021 - DvMF_1573 0.66 +5.0
1,940,096 - DvMF_1573 0.71 +5.3
1,940,466 - +5.5
1,940,466 - +5.3
1,940,525 + +3.9
1,940,525 + +5.1
1,940,528 - +5.5
1,940,618 + +5.1
1,940,637 + +8.9
1,940,716 - DvMF_1574 0.14 +4.9
1,941,107 + DvMF_1574 0.49 +5.2
1,941,199 + DvMF_1574 0.57 +5.1
1,941,338 - DvMF_1574 0.69 +4.8

Or see this region's nucleotide sequence