Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1533

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1532 and DvMF_1533 are separated by 87 nucleotidesDvMF_1533 and DvMF_1534 overlap by 17 nucleotidesDvMF_1534 and DvMF_1535 are separated by 330 nucleotides DvMF_1532: DvMF_1532 - carboxynorspermidine decarboxylase (RefSeq), at 1,889,088 to 1,890,305 _1532 DvMF_1533: DvMF_1533 - hypothetical protein (RefSeq), at 1,890,393 to 1,891,082 _1533 DvMF_1534: DvMF_1534 - hypothetical protein (RefSeq), at 1,891,066 to 1,891,599 _1534 DvMF_1535: DvMF_1535 - Saccharopine dehydrogenase (RefSeq), at 1,891,930 to 1,893,120 _1535 Position (kb) 1890 1891 1892Strain fitness (log2 ratio) -3 -2 -1 0 1at 1889.482 kb on + strand, within DvMF_1532at 1889.482 kb on + strand, within DvMF_1532at 1889.507 kb on + strand, within DvMF_1532at 1889.533 kb on - strand, within DvMF_1532at 1889.558 kb on - strand, within DvMF_1532at 1889.723 kb on - strand, within DvMF_1532at 1889.863 kb on + strand, within DvMF_1532at 1890.074 kb on + strand, within DvMF_1532at 1890.197 kb on - strandat 1890.309 kb on + strandat 1890.390 kb on + strandat 1890.570 kb on - strand, within DvMF_1533at 1890.664 kb on + strand, within DvMF_1533at 1890.720 kb on + strand, within DvMF_1533at 1890.815 kb on + strand, within DvMF_1533at 1891.063 kb on + strandat 1891.691 kb on + strandat 1891.771 kb on - strandat 1891.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,889,482 + DvMF_1532 0.32 -3.0
1,889,482 + DvMF_1532 0.32 -1.3
1,889,507 + DvMF_1532 0.34 -1.8
1,889,533 - DvMF_1532 0.37 -1.5
1,889,558 - DvMF_1532 0.39 -1.0
1,889,723 - DvMF_1532 0.52 -1.3
1,889,863 + DvMF_1532 0.64 -1.3
1,890,074 + DvMF_1532 0.81 +0.1
1,890,197 - -1.5
1,890,309 + -0.5
1,890,390 + -0.1
1,890,570 - DvMF_1533 0.26 +0.8
1,890,664 + DvMF_1533 0.39 -0.5
1,890,720 + DvMF_1533 0.47 -0.4
1,890,815 + DvMF_1533 0.61 -0.5
1,891,063 + -0.7
1,891,691 + -3.2
1,891,771 - +1.4
1,891,927 - -1.1

Or see this region's nucleotide sequence