Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1500

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1499 and DvMF_1500 are separated by 87 nucleotidesDvMF_1500 and DvMF_1501 are separated by 466 nucleotides DvMF_1499: DvMF_1499 - periplasmic binding protein (RefSeq), at 1,849,823 to 1,850,971 _1499 DvMF_1500: DvMF_1500 - precorrin-2 C20-methyltransferase (RefSeq), at 1,851,059 to 1,851,838 _1500 DvMF_1501: DvMF_1501 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,852,305 to 1,854,350 _1501 Position (kb) 1851 1852Strain fitness (log2 ratio) -1 0 1 2 3at 1850.113 kb on + strand, within DvMF_1499at 1850.177 kb on - strand, within DvMF_1499at 1850.336 kb on + strand, within DvMF_1499at 1850.600 kb on - strand, within DvMF_1499at 1850.888 kb on - strandat 1851.016 kb on + strandat 1851.452 kb on - strand, within DvMF_1500at 1851.740 kb on - strand, within DvMF_1500at 1851.801 kb on - strandat 1851.909 kb on + strandat 1852.068 kb on - strandat 1852.187 kb on + strandat 1852.197 kb on + strandat 1852.270 kb on - strandat 1852.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,850,113 + DvMF_1499 0.25 -0.2
1,850,177 - DvMF_1499 0.31 +0.6
1,850,336 + DvMF_1499 0.45 +0.0
1,850,600 - DvMF_1499 0.68 +0.1
1,850,888 - -0.6
1,851,016 + -0.8
1,851,452 - DvMF_1500 0.50 -0.4
1,851,740 - DvMF_1500 0.87 +2.9
1,851,801 - +0.4
1,851,909 + -1.0
1,852,068 - -0.6
1,852,187 + -1.0
1,852,197 + -1.1
1,852,270 - -0.4
1,852,349 - -0.2

Or see this region's nucleotide sequence