Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1470

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1468 and DvMF_1469 are separated by 110 nucleotidesDvMF_1469 and DvMF_1470 are separated by 285 nucleotidesDvMF_1470 and DvMF_1471 overlap by 4 nucleotides DvMF_1468: DvMF_1468 - adenylosuccinate lyase (RefSeq), at 1,798,933 to 1,800,231 _1468 DvMF_1469: DvMF_1469 - orotate phosphoribosyltransferase (RefSeq), at 1,800,342 to 1,800,902 _1469 DvMF_1470: DvMF_1470 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,801,188 to 1,802,486 _1470 DvMF_1471: DvMF_1471 - hypothetical protein (RefSeq), at 1,802,483 to 1,803,349 _1471 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -3 -2 -1 0 1at 1800.285 kb on - strandat 1800.788 kb on + strand, within DvMF_1469at 1800.881 kb on + strandat 1800.923 kb on + strandat 1800.982 kb on + strandat 1801.055 kb on - strandat 1801.152 kb on + strandat 1801.792 kb on - strand, within DvMF_1470at 1801.803 kb on - strand, within DvMF_1470at 1801.810 kb on - strand, within DvMF_1470at 1801.810 kb on - strand, within DvMF_1470at 1802.243 kb on + strand, within DvMF_1470at 1802.409 kb on + strandat 1802.610 kb on + strand, within DvMF_1471at 1802.697 kb on - strand, within DvMF_1471at 1803.228 kb on + strand, within DvMF_1471

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
remove
1,800,285 - -1.3
1,800,788 + DvMF_1469 0.80 -3.2
1,800,881 + -0.6
1,800,923 + +0.4
1,800,982 + +1.4
1,801,055 - +0.3
1,801,152 + +0.4
1,801,792 - DvMF_1470 0.46 +1.5
1,801,803 - DvMF_1470 0.47 +1.7
1,801,810 - DvMF_1470 0.48 +1.5
1,801,810 - DvMF_1470 0.48 +1.5
1,802,243 + DvMF_1470 0.81 +0.3
1,802,409 + -0.2
1,802,610 + DvMF_1471 0.15 -1.5
1,802,697 - DvMF_1471 0.25 -1.6
1,803,228 + DvMF_1471 0.86 -0.3

Or see this region's nucleotide sequence