Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1395

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1393 and DvMF_1394 overlap by 44 nucleotidesDvMF_1394 and truA are separated by 3 nucleotidestruA and DvMF_1396 are separated by 306 nucleotides DvMF_1393: DvMF_1393 - flagellar export protein FliJ (RefSeq), at 1,700,278 to 1,700,718 _1393 DvMF_1394: DvMF_1394 - hypothetical protein (RefSeq), at 1,700,675 to 1,701,652 _1394 DvMF_1395: truA - tRNA pseudouridine synthase A (RefSeq), at 1,701,656 to 1,702,489 truA DvMF_1396: DvMF_1396 - flagellar motor switch protein FliM (RefSeq), at 1,702,796 to 1,703,776 _1396 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -1 0 1 2 3at 1701.403 kb on + strand, within DvMF_1394at 1701.430 kb on + strand, within DvMF_1394at 1701.486 kb on - strand, within DvMF_1394at 1701.575 kb on + strandat 1701.698 kb on - strandat 1701.749 kb on + strand, within truAat 1701.757 kb on - strand, within truAat 1702.002 kb on - strand, within truAat 1702.353 kb on - strand, within truAat 1702.390 kb on - strand, within truAat 1702.461 kb on + strandat 1702.461 kb on + strandat 1702.466 kb on + strandat 1702.474 kb on - strandat 1702.737 kb on - strandat 1703.005 kb on + strand, within DvMF_1396at 1703.167 kb on + strand, within DvMF_1396

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,701,403 + DvMF_1394 0.74 +3.2
1,701,430 + DvMF_1394 0.77 +3.0
1,701,486 - DvMF_1394 0.83 +2.7
1,701,575 + +2.6
1,701,698 - -0.1
1,701,749 + truA DvMF_1395 0.11 +0.4
1,701,757 - truA DvMF_1395 0.12 +0.4
1,702,002 - truA DvMF_1395 0.41 +0.6
1,702,353 - truA DvMF_1395 0.84 +0.2
1,702,390 - truA DvMF_1395 0.88 +0.9
1,702,461 + +0.7
1,702,461 + +1.2
1,702,466 + +0.8
1,702,474 - +0.6
1,702,737 - -0.7
1,703,005 + DvMF_1396 0.21 +1.9
1,703,167 + DvMF_1396 0.38 +0.7

Or see this region's nucleotide sequence