Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1365

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1364 and DvMF_1365 are separated by 228 nucleotidesDvMF_1365 and DvMF_1366 are separated by 331 nucleotides DvMF_1364: DvMF_1364 - ferric uptake regulator, Fur family (RefSeq), at 1,670,975 to 1,671,433 _1364 DvMF_1365: DvMF_1365 - Peptidase M16C associated domain protein (RefSeq), at 1,671,662 to 1,674,568 _1365 DvMF_1366: DvMF_1366 - diguanylate cyclase (RefSeq), at 1,674,900 to 1,675,676 _1366 Position (kb) 1671 1672 1673 1674 1675Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1671.476 kb on - strandat 1671.476 kb on - strandat 1671.480 kb on + strandat 1671.581 kb on + strandat 1671.589 kb on - strandat 1671.777 kb on + strandat 1671.900 kb on - strandat 1672.091 kb on - strand, within DvMF_1365at 1672.131 kb on + strand, within DvMF_1365at 1672.164 kb on + strand, within DvMF_1365at 1672.172 kb on - strand, within DvMF_1365at 1672.172 kb on - strand, within DvMF_1365at 1672.203 kb on + strand, within DvMF_1365at 1672.226 kb on - strand, within DvMF_1365at 1672.262 kb on + strand, within DvMF_1365at 1672.276 kb on + strand, within DvMF_1365at 1672.494 kb on - strand, within DvMF_1365at 1672.520 kb on + strand, within DvMF_1365at 1672.744 kb on + strand, within DvMF_1365at 1672.744 kb on + strand, within DvMF_1365at 1673.622 kb on - strand, within DvMF_1365at 1673.701 kb on - strand, within DvMF_1365at 1673.974 kb on + strand, within DvMF_1365at 1674.057 kb on - strand, within DvMF_1365at 1674.103 kb on - strand, within DvMF_1365at 1674.150 kb on - strand, within DvMF_1365at 1674.384 kb on - strandat 1674.973 kb on + strandat 1674.975 kb on - strandat 1675.010 kb on - strand, within DvMF_1366at 1675.047 kb on - strand, within DvMF_1366at 1675.204 kb on + strand, within DvMF_1366at 1675.298 kb on + strand, within DvMF_1366at 1675.318 kb on + strand, within DvMF_1366at 1675.493 kb on - strand, within DvMF_1366

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,671,476 - +0.6
1,671,476 - +0.2
1,671,480 + +1.5
1,671,581 + -0.2
1,671,589 - -0.7
1,671,777 + +0.2
1,671,900 - +0.7
1,672,091 - DvMF_1365 0.15 +0.3
1,672,131 + DvMF_1365 0.16 +3.0
1,672,164 + DvMF_1365 0.17 -1.9
1,672,172 - DvMF_1365 0.18 -1.8
1,672,172 - DvMF_1365 0.18 +0.9
1,672,203 + DvMF_1365 0.19 +0.9
1,672,226 - DvMF_1365 0.19 -0.1
1,672,262 + DvMF_1365 0.21 +0.2
1,672,276 + DvMF_1365 0.21 +0.3
1,672,494 - DvMF_1365 0.29 -0.1
1,672,520 + DvMF_1365 0.30 +1.0
1,672,744 + DvMF_1365 0.37 -0.7
1,672,744 + DvMF_1365 0.37 -0.3
1,673,622 - DvMF_1365 0.67 +0.0
1,673,701 - DvMF_1365 0.70 -0.5
1,673,974 + DvMF_1365 0.80 -1.1
1,674,057 - DvMF_1365 0.82 -1.2
1,674,103 - DvMF_1365 0.84 -1.7
1,674,150 - DvMF_1365 0.86 +0.5
1,674,384 - -0.7
1,674,973 + +3.1
1,674,975 - -1.2
1,675,010 - DvMF_1366 0.14 -1.5
1,675,047 - DvMF_1366 0.19 -1.0
1,675,204 + DvMF_1366 0.39 -1.3
1,675,298 + DvMF_1366 0.51 -1.7
1,675,318 + DvMF_1366 0.54 -1.4
1,675,493 - DvMF_1366 0.76 -1.4

Or see this region's nucleotide sequence