Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1289

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1288 and DvMF_1289 are separated by 204 nucleotidesDvMF_1289 and DvMF_1290 are separated by 142 nucleotidesDvMF_1290 and DvMF_1291 overlap by 4 nucleotides DvMF_1288: DvMF_1288 - hypothetical protein (RefSeq), at 1,578,990 to 1,579,994 _1288 DvMF_1289: DvMF_1289 - protein of unknown function DUF1320 (RefSeq), at 1,580,199 to 1,580,630 _1289 DvMF_1290: DvMF_1290 - phage virion morphogenesis protein (RefSeq), at 1,580,773 to 1,581,219 _1290 DvMF_1291: DvMF_1291 - hypothetical protein (RefSeq), at 1,581,216 to 1,581,752 _1291 Position (kb) 1580 1581Strain fitness (log2 ratio) -2 -1 0 1 2at 1579.284 kb on - strand, within DvMF_1288at 1579.383 kb on + strand, within DvMF_1288at 1579.386 kb on + strand, within DvMF_1288at 1579.470 kb on - strand, within DvMF_1288at 1579.684 kb on + strand, within DvMF_1288at 1579.692 kb on - strand, within DvMF_1288at 1579.702 kb on - strand, within DvMF_1288at 1579.734 kb on + strand, within DvMF_1288at 1579.739 kb on + strand, within DvMF_1288at 1579.778 kb on + strand, within DvMF_1288at 1579.827 kb on + strand, within DvMF_1288at 1579.827 kb on + strand, within DvMF_1288at 1579.827 kb on + strand, within DvMF_1288at 1579.832 kb on + strand, within DvMF_1288at 1579.932 kb on - strandat 1579.934 kb on + strandat 1579.942 kb on - strandat 1580.156 kb on + strandat 1580.232 kb on - strandat 1580.306 kb on + strand, within DvMF_1289at 1580.323 kb on - strand, within DvMF_1289at 1580.651 kb on - strandat 1580.791 kb on + strandat 1580.806 kb on + strandat 1580.840 kb on + strand, within DvMF_1290at 1581.097 kb on + strand, within DvMF_1290at 1581.153 kb on + strand, within DvMF_1290at 1581.153 kb on + strand, within DvMF_1290at 1581.161 kb on - strand, within DvMF_1290at 1581.186 kb on + strandat 1581.396 kb on + strand, within DvMF_1291at 1581.593 kb on + strand, within DvMF_1291at 1581.598 kb on + strand, within DvMF_1291

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,579,284 - DvMF_1288 0.29 -1.7
1,579,383 + DvMF_1288 0.39 -1.2
1,579,386 + DvMF_1288 0.39 -2.2
1,579,470 - DvMF_1288 0.48 -2.7
1,579,684 + DvMF_1288 0.69 +1.3
1,579,692 - DvMF_1288 0.70 -0.7
1,579,702 - DvMF_1288 0.71 -1.3
1,579,734 + DvMF_1288 0.74 -0.2
1,579,739 + DvMF_1288 0.75 +0.3
1,579,778 + DvMF_1288 0.78 -0.3
1,579,827 + DvMF_1288 0.83 -0.8
1,579,827 + DvMF_1288 0.83 -0.7
1,579,827 + DvMF_1288 0.83 -0.6
1,579,832 + DvMF_1288 0.84 -0.7
1,579,932 - -0.7
1,579,934 + +0.1
1,579,942 - -0.4
1,580,156 + -0.6
1,580,232 - -0.8
1,580,306 + DvMF_1289 0.25 -0.8
1,580,323 - DvMF_1289 0.29 -2.1
1,580,651 - +0.6
1,580,791 + -2.0
1,580,806 + -1.0
1,580,840 + DvMF_1290 0.15 -0.3
1,581,097 + DvMF_1290 0.72 +1.0
1,581,153 + DvMF_1290 0.85 -0.8
1,581,153 + DvMF_1290 0.85 -1.9
1,581,161 - DvMF_1290 0.87 -1.6
1,581,186 + -1.2
1,581,396 + DvMF_1291 0.34 +0.4
1,581,593 + DvMF_1291 0.70 +1.8
1,581,598 + DvMF_1291 0.71 +0.1

Or see this region's nucleotide sequence