Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1242

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1241 and DvMF_1242 are separated by 312 nucleotidesDvMF_1242 and DvMF_1243 are separated by 295 nucleotides DvMF_1241: DvMF_1241 - ferric uptake regulator, Fur family (RefSeq), at 1,530,481 to 1,530,993 _1241 DvMF_1242: DvMF_1242 - Catalase (RefSeq), at 1,531,306 to 1,532,748 _1242 DvMF_1243: DvMF_1243 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,533,044 to 1,535,248 _1243 Position (kb) 1531 1532 1533Strain fitness (log2 ratio) -3 -2 -1 0 1at 1530.353 kb on - strandat 1530.353 kb on - strandat 1530.402 kb on + strandat 1530.421 kb on + strandat 1530.429 kb on - strandat 1530.457 kb on + strandat 1530.492 kb on + strandat 1530.675 kb on + strand, within DvMF_1241at 1530.683 kb on - strand, within DvMF_1241at 1531.448 kb on + strandat 1531.627 kb on + strand, within DvMF_1242at 1531.629 kb on - strand, within DvMF_1242at 1531.655 kb on - strand, within DvMF_1242at 1531.734 kb on + strand, within DvMF_1242at 1531.765 kb on + strand, within DvMF_1242at 1532.043 kb on - strand, within DvMF_1242at 1532.068 kb on + strand, within DvMF_1242at 1532.159 kb on - strand, within DvMF_1242at 1532.569 kb on - strand, within DvMF_1242at 1532.846 kb on - strandat 1532.913 kb on + strandat 1532.926 kb on - strandat 1533.289 kb on + strand, within DvMF_1243at 1533.289 kb on - strand, within DvMF_1243at 1533.336 kb on + strand, within DvMF_1243at 1533.422 kb on - strand, within DvMF_1243at 1533.491 kb on + strand, within DvMF_1243

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,530,353 - -0.8
1,530,353 - -0.9
1,530,402 + -0.6
1,530,421 + -2.6
1,530,429 - +0.7
1,530,457 + -1.1
1,530,492 + +1.1
1,530,675 + DvMF_1241 0.38 -0.7
1,530,683 - DvMF_1241 0.39 -0.6
1,531,448 + -2.2
1,531,627 + DvMF_1242 0.22 -0.4
1,531,629 - DvMF_1242 0.22 -1.0
1,531,655 - DvMF_1242 0.24 -1.1
1,531,734 + DvMF_1242 0.30 -0.1
1,531,765 + DvMF_1242 0.32 -0.7
1,532,043 - DvMF_1242 0.51 +0.1
1,532,068 + DvMF_1242 0.53 +0.2
1,532,159 - DvMF_1242 0.59 +0.5
1,532,569 - DvMF_1242 0.88 -1.7
1,532,846 - -3.3
1,532,913 + +0.0
1,532,926 - -0.0
1,533,289 + DvMF_1243 0.11 -0.9
1,533,289 - DvMF_1243 0.11 -2.3
1,533,336 + DvMF_1243 0.13 -0.6
1,533,422 - DvMF_1243 0.17 -1.1
1,533,491 + DvMF_1243 0.20 -0.3

Or see this region's nucleotide sequence