Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1181

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1180 and DvMF_1181 are separated by 345 nucleotidesDvMF_1181 and DvMF_1182 are separated by 31 nucleotidesDvMF_1182 and DvMF_1183 are separated by 15 nucleotidesDvMF_1183 and DvMF_R0036 are separated by 22 nucleotides DvMF_1180: DvMF_1180 - hypothetical protein (RefSeq), at 1,458,669 to 1,459,139 _1180 DvMF_1181: DvMF_1181 - UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 1,459,485 to 1,460,852 _1181 DvMF_1182: DvMF_1182 - hypothetical protein (RefSeq), at 1,460,884 to 1,461,120 _1182 DvMF_1183: DvMF_1183 - hypothetical protein (RefSeq), at 1,461,136 to 1,461,399 _1183 DvMF_R0036: DvMF_R0036 - 6S RNA (RefSeq), at 1,461,422 to 1,461,607 _R0036 Position (kb) 1459 1460 1461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1458.497 kb on - strandat 1458.532 kb on + strandat 1458.533 kb on - strandat 1458.630 kb on + strandat 1458.864 kb on - strand, within DvMF_1180at 1459.142 kb on + strandat 1459.355 kb on - strandat 1459.355 kb on - strandat 1459.355 kb on - strandat 1460.934 kb on + strand, within DvMF_1182at 1461.283 kb on + strand, within DvMF_1183at 1461.659 kb on + strandat 1461.659 kb on + strandat 1461.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,458,497 - -0.9
1,458,532 + -0.8
1,458,533 - -0.8
1,458,630 + -0.4
1,458,864 - DvMF_1180 0.41 -0.4
1,459,142 + -0.4
1,459,355 - +0.2
1,459,355 - -0.6
1,459,355 - +0.5
1,460,934 + DvMF_1182 0.21 -4.3
1,461,283 + DvMF_1183 0.56 -1.6
1,461,659 + +0.7
1,461,659 + +0.0
1,461,814 + -1.0

Or see this region's nucleotide sequence