Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1164

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1162 and DvMF_1163 overlap by 1 nucleotidesDvMF_1163 and DvMF_1164 are separated by 12 nucleotidesDvMF_1164 and DvMF_1165 are separated by 30 nucleotides DvMF_1162: DvMF_1162 - ABC transporter related (RefSeq), at 1,437,322 to 1,438,047 _1162 DvMF_1163: DvMF_1163 - ABC transporter related (RefSeq), at 1,438,047 to 1,438,814 _1163 DvMF_1164: DvMF_1164 - inner-membrane translocator (RefSeq), at 1,438,827 to 1,439,903 _1164 DvMF_1165: DvMF_1165 - inner-membrane translocator (RefSeq), at 1,439,934 to 1,440,854 _1165 Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -1 0 1 2 3 4at 1437.910 kb on + strand, within DvMF_1162at 1438.303 kb on - strand, within DvMF_1163at 1438.338 kb on - strand, within DvMF_1163at 1438.542 kb on - strand, within DvMF_1163at 1439.010 kb on - strand, within DvMF_1164at 1439.014 kb on - strand, within DvMF_1164at 1439.171 kb on - strand, within DvMF_1164at 1439.183 kb on - strand, within DvMF_1164at 1439.231 kb on - strand, within DvMF_1164at 1439.254 kb on + strand, within DvMF_1164at 1439.341 kb on + strand, within DvMF_1164at 1439.672 kb on - strand, within DvMF_1164at 1439.672 kb on - strand, within DvMF_1164at 1439.799 kb on + strandat 1439.799 kb on + strandat 1439.807 kb on - strandat 1440.178 kb on + strand, within DvMF_1165at 1440.186 kb on - strand, within DvMF_1165at 1440.421 kb on + strand, within DvMF_1165at 1440.429 kb on - strand, within DvMF_1165at 1440.525 kb on + strand, within DvMF_1165at 1440.528 kb on - strand, within DvMF_1165at 1440.555 kb on - strand, within DvMF_1165at 1440.656 kb on + strand, within DvMF_1165at 1440.771 kb on - strandat 1440.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,437,910 + DvMF_1162 0.81 +0.3
1,438,303 - DvMF_1163 0.33 +1.0
1,438,338 - DvMF_1163 0.38 -1.5
1,438,542 - DvMF_1163 0.64 -1.5
1,439,010 - DvMF_1164 0.17 -0.8
1,439,014 - DvMF_1164 0.17 +3.5
1,439,171 - DvMF_1164 0.32 -0.6
1,439,183 - DvMF_1164 0.33 -0.6
1,439,231 - DvMF_1164 0.38 +3.8
1,439,254 + DvMF_1164 0.40 -0.6
1,439,341 + DvMF_1164 0.48 -1.7
1,439,672 - DvMF_1164 0.78 -0.8
1,439,672 - DvMF_1164 0.78 +1.8
1,439,799 + +0.5
1,439,799 + -0.6
1,439,807 - -1.2
1,440,178 + DvMF_1165 0.26 -0.5
1,440,186 - DvMF_1165 0.27 +3.3
1,440,421 + DvMF_1165 0.53 -0.8
1,440,429 - DvMF_1165 0.54 -0.8
1,440,525 + DvMF_1165 0.64 -0.5
1,440,528 - DvMF_1165 0.64 +0.4
1,440,555 - DvMF_1165 0.67 -0.6
1,440,656 + DvMF_1165 0.78 +0.0
1,440,771 - -0.6
1,440,774 - -0.7

Or see this region's nucleotide sequence